Gene annotation
Transcriptome id Sobic.003G292100.3,Sobic.003G292100.2,Sobic.003G292100.1,Sobic.003G292100.4,Sobic.003G292100.5,Sobic.003G292100.6,Sobic.003G292100.7
Synonym Sb03g034250
Functional annotation pectinesterase, putative, expressed
UniProt A0A1W0VZG9 , A0A1W0VZH8 , A0A1B6Q5Z8 , A0A1W0VZE3 , A0A1W0VZH3 , A0A1W0VZF9
Pfam PF01095
Panther DB PTHR31321 PTHR31321:SF16 PTHR31321 PTHR31321:SF21
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT5G19730 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g53990.2,LOC_Os01g53990.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a044317 , Zm00025a040070 , Zm00025a037982 , Zm00025a027644
Brachypodium KQK05323 , KQK05324 , PNT72828 , PNT72827 , PNT72826 , PNT70885 , PNT70886 , KQK09679
Barley HORVU1Hr1G075860.9 , HORVU1Hr1G075860.8 , HORVU1Hr1G075860.1 , HORVU1Hr1G075860.3 , HORVU1Hr1G075860.2 , HORVU1Hr1G075860.5 , HORVU1Hr1G075860.4 , HORVU1Hr1G075860.7 , HORVU1Hr1G075860.6 , HORVU1Hr1G075860.11 , HORVU1Hr1G075860.10 , HORVU1Hr1G075860.12
Wheat TraesCS2D02G090400 , TraesCS1B02G354500 , TraesCS1B02G354500 , TraesCS1A02G341800 , TraesCS1A02G341800 , TraesCS2D02G099900 , TraesCS2A02G100400 , TraesCS2B02G117500 , TraesCS2B02G117500 , TraesCS1D02G344100 , TraesCS1D02G344100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G327600 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
2 Sobic.001G254800 cytochrome P450, putative, expressed -
3 Sobic.001G534200 - -
4 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
5 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
6 Sobic.009G025500 OsRCI2-7 - Putative low temperature and salt responsive protein, expressed -
7 Sobic.002G240000 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
8 Sobic.006G167700 oleosin, putative, expressed -
9 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
10 Sobic.002G184700 expressed protein -
11 Sobic.005G126701 - -
12 Sobic.006G248000 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
13 Sobic.007G025600 amino acid transporter, putative, expressed -
14 Sobic.001G344300 - -
15 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
16 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
17 Sobic.006G217800 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.002G211300 aminotransferase, classes I and II, domain containing protein, expressed K00814: GPT, alanine transaminase
19 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
20 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -


Gene co-expression network
sample Sobic003G292100 Sobic003G292100 Sobic002G327600 Sobic002G327600 Sobic003G292100--Sobic002G327600 Sobic001G254800 Sobic001G254800 Sobic003G292100--Sobic001G254800 Sobic001G534200 Sobic001G534200 Sobic003G292100--Sobic001G534200 Sobic005G021000 Sobic005G021000 Sobic003G292100--Sobic005G021000 Sobic010G198900 Sobic010G198900 Sobic003G292100--Sobic010G198900 Sobic009G025500 Sobic009G025500 Sobic003G292100--Sobic009G025500 Sobic002G240000 Sobic002G240000 Sobic003G292100--Sobic002G240000 Sobic006G167700 Sobic006G167700 Sobic003G292100--Sobic006G167700 Sobic009G103800 Sobic009G103800 Sobic003G292100--Sobic009G103800 Sobic006G248000 Sobic006G248000 Sobic002G327600--Sobic006G248000 Sobic010G125000 Sobic010G125000 Sobic002G327600--Sobic010G125000 Sobic001G166900 Sobic001G166900 Sobic002G327600--Sobic001G166900 Sobic001G165600 Sobic001G165600 Sobic002G327600--Sobic001G165600 Sobic002G211300 Sobic002G211300 Sobic002G327600--Sobic002G211300 Sobic008G149300 Sobic008G149300 Sobic002G327600--Sobic008G149300 Sobic004G349550 Sobic004G349550 Sobic002G327600--Sobic004G349550 Sobic002G327600--Sobic006G167700 Sobic002G327600--Sobic010G198900 Sobic007G025600 Sobic007G025600 Sobic001G254800--Sobic007G025600 Sobic001G254800--Sobic009G103800 Sobic001G254800--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic001G254800--Sobic002G184700 Sobic001G344300 Sobic001G344300 Sobic001G254800--Sobic001G344300 Sobic001G254800--Sobic004G349550 Sobic001G254800--Sobic001G534200 Sobic001G254800--Sobic010G198900 Sobic001G254800--Sobic001G166900 Sobic001G534200--Sobic006G167700 Sobic001G534200--Sobic002G184700 Sobic001G534200--Sobic009G103800 Sobic001G534200--Sobic001G166900 Sobic001G534200--Sobic001G344300 Sobic003G372600 Sobic003G372600 Sobic001G534200--Sobic003G372600 Sobic001G208500 Sobic001G208500 Sobic001G534200--Sobic001G208500 Sobic001G534200--Sobic002G211300 Sobic001G534200--Sobic010G198900 Sobic005G021000--Sobic001G254800 Sobic006G217800 Sobic006G217800 Sobic005G021000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic005G021000--Sobic003G443400 Sobic005G021000--Sobic007G025600 Sobic005G021000--Sobic008G149300 Sobic005G021000--Sobic001G534200 Sobic005G021000--Sobic009G103800 Sobic005G021000--Sobic006G167700 Sobic005G021000--Sobic001G166900 Sobic010G198900--Sobic006G248000 Sobic010G198900--Sobic003G372600 Sobic010G198900--Sobic006G167700 Sobic010G198900--Sobic001G166900 Sobic010G198900--Sobic002G211300 Sobic002G046000 Sobic002G046000 Sobic010G198900--Sobic002G046000 Sobic010G198900--Sobic002G184700 Sobic010G198900--Sobic010G125000 Sobic010G198900--Sobic009G103800 Sobic009G025500--Sobic010G198900 Sobic009G025500--Sobic006G167700 Sobic009G025500--Sobic002G184700 Sobic009G025500--Sobic002G211300 Sobic009G025500--Sobic010G125000 Sobic009G025500--Sobic001G344300 Sobic009G025500--Sobic001G166900 Sobic009G025500--Sobic003G372600 Sobic009G025500--Sobic001G534200 Sobic002G240000--Sobic005G021000 Sobic002G240000--Sobic001G254800 Sobic002G240000--Sobic001G534200 Sobic002G240000--Sobic008G149300 Sobic009G246250 Sobic009G246250 Sobic002G240000--Sobic009G246250 Sobic006G083900 Sobic006G083900 Sobic002G240000--Sobic006G083900 Sobic010G053400 Sobic010G053400 Sobic002G240000--Sobic010G053400 Sobic002G240000--Sobic007G025600 Sobic002G240000--Sobic004G349550 Sobic006G167700--Sobic002G184700 Sobic006G167700--Sobic009G103800 Sobic006G167700--Sobic001G344300 Sobic006G167700--Sobic001G166900 Sobic006G167700--Sobic001G165600 Sobic006G167700--Sobic002G046000 Sobic006G167700--Sobic002G211300 Sobic006G167700--Sobic003G372600 Sobic006G167700--Sobic004G349550 Sobic009G103800--Sobic002G184700 Sobic009G103800--Sobic001G344300 Sobic009G103800--Sobic006G167700 Sobic009G103800--Sobic002G046000 Sobic009G103800--Sobic004G349550 Sobic009G103800--Sobic001G166900 Sobic009G103800--Sobic007G025600 Sobic009G103800--Sobic003G372600 Sobic009G103800--Sobic001G534200
Octagon: transcription factors


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