Gene annotation
Transcriptome id Sobic.003G296000.4,Sobic.003G296000.3
Synonym ATTPSA, ATTPS7, Sb03g034640, TPS7
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
trehalose synthase, putative, expressed
UniProt C5XK41
Pfam PF02358 PF00982
Panther DB PTHR10788 PTHR10788:SF18
NCBI CDD -
KEGG Orthology K16055; trehalose 6-phosphate synthase/phosphatase
Gene Ontology GO:0005992; trehalose biosynthetic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G06410 : trehalose-phosphatase/synthase 7
RAP-DB (Rice) LOC_Os01g54560.1 : trehalose synthase, putative, expressed
MaizeGDB (Corn) Zm00025a027584 , Zm00025a027583 , Zm00025a040050
Brachypodium KQK09736 , KQK05370
Barley HORVU5Hr1G036360.4 , HORVU5Hr1G036360.3 , HORVU5Hr1G036360.2 , HORVU5Hr1G036360.1 , HORVU1Hr1G076480.3 , HORVU1Hr1G076480.1 , HORVU1Hr1G076480.4 , HORVU3Hr1G071570.1 , HORVU3Hr1G071570.3 , HORVU3Hr1G071570.2 , HORVU3Hr1G071570.5 , HORVU3Hr1G071570.4 , HORVU3Hr1G071570.6
Wheat TraesCS3D02G289100 , TraesCS3D02G289100 , TraesCS3D02G289100 , TraesCS3A02G289300 , TraesCS3B02G323900 , TraesCS1A02G338200 , TraesCS1B02G350600 , TraesCS5B02G117800 , TraesCS1D02G340400 , TraesCS3B02G323900
Populus PNT32223


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G227700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase, putative, expressed -
2 Sobic.009G003800 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
3 Sobic.009G026600 - -
4 Sobic.003G063400 glycosyltransferase family 43 protein, putative, expressed -
5 Sobic.004G093700 tetraspanin family protein, putative, expressed -
6 Sobic.003G375500 PHD-finger domain containing protein, putative, expressed -
7 Sobic.004G250400 aluminum-activated malate transporter, putative, expressed -
8 Sobic.005G027350 - -
9 Sobic.002G324801 - -
10 Sobic.001G460900 expressed protein -
11 Sobic.010G100700 HEAT repeat family protein, putative, expressed -
12 Sobic.001G476600 Zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
13 Sobic.009G074800 - -
14 Sobic.007G183600 expressed protein -
15 Sobic.003G401700 - -
16 Sobic.008G142200 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
17 Sobic.010G012200 - K00851: E2.7.1.12, gntK, gluconokinase
18 Sobic.010G183350 - -
19 Sobic.008G037300 RCN1 Centroradialis-like1 homogous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
20 Sobic.009G094200 - -


Gene co-expression network
sample Sobic003G296000 Sobic003G296000 Sobic004G227700 Sobic004G227700 Sobic003G296000--Sobic004G227700 Sobic009G003800 Sobic009G003800 Sobic003G296000--Sobic009G003800 Sobic009G026600 Sobic009G026600 Sobic003G296000--Sobic009G026600 Sobic003G063400 Sobic003G063400 Sobic003G296000--Sobic003G063400 Sobic004G093700 Sobic004G093700 Sobic003G296000--Sobic004G093700 Sobic003G375500 Sobic003G375500 Sobic003G296000--Sobic003G375500 Sobic004G250400 Sobic004G250400 Sobic003G296000--Sobic004G250400 Sobic005G027350 Sobic005G027350 Sobic003G296000--Sobic005G027350 Sobic002G324801 Sobic002G324801 Sobic003G296000--Sobic002G324801 Sobic008G142200 Sobic008G142200 Sobic004G227700--Sobic008G142200 Sobic002G187900 Sobic002G187900 Sobic004G227700--Sobic002G187900 Sobic009G094200 Sobic009G094200 Sobic004G227700--Sobic009G094200 Sobic004G082600 Sobic004G082600 Sobic004G227700--Sobic004G082600 Sobic003G263900 Sobic003G263900 Sobic004G227700--Sobic003G263900 Sobic003G155000 Sobic003G155000 Sobic004G227700--Sobic003G155000 Sobic004G227700--Sobic003G063400 Sobic006G134300 Sobic006G134300 Sobic004G227700--Sobic006G134300 Sobic004G227700--Sobic004G250400 Sobic007G219000 Sobic007G219000 Sobic009G003800--Sobic007G219000 Sobic009G003800--Sobic003G296000 Sobic009G122000 Sobic009G122000 Sobic009G003800--Sobic009G122000 Sobic010G019500 Sobic010G019500 Sobic009G003800--Sobic010G019500 Sobic001G079000 Sobic001G079000 Sobic009G003800--Sobic001G079000 Sobic008G037300 Sobic008G037300 Sobic009G003800--Sobic008G037300 Sobic002G336500 Sobic002G336500 Sobic009G003800--Sobic002G336500 Sobic010G187950 Sobic010G187950 Sobic009G003800--Sobic010G187950 Sobic001G370800 Sobic001G370800 Sobic009G003800--Sobic001G370800 Sobic009G026600--Sobic001G370800 Sobic009G026600--Sobic003G063400 Sobic009G026600--Sobic005G027350 Sobic001G038700 Sobic001G038700 Sobic009G026600--Sobic001G038700 Sobic009G026600--Sobic004G250400 Sobic001G001800 Sobic001G001800 Sobic009G026600--Sobic001G001800 Sobic009G026600--Sobic008G037300 Sobic002G309300 Sobic002G309300 Sobic009G026600--Sobic002G309300 Sobic010G012200 Sobic010G012200 Sobic009G026600--Sobic010G012200 Sobic003G063400--Sobic004G250400 Sobic003G063400--Sobic009G026600 Sobic003G063400--Sobic004G093700 Sobic003G063400--Sobic010G012200 Sobic003G063400--Sobic004G227700 Sobic003G063400--Sobic003G263900 Sobic007G183600 Sobic007G183600 Sobic003G063400--Sobic007G183600 Sobic010G100700 Sobic010G100700 Sobic003G063400--Sobic010G100700 Sobic003G063400--Sobic008G142200 Sobic004G093700--Sobic010G100700 Sobic004G093700--Sobic003G063400 Sobic004G093700--Sobic009G026600 Sobic008G072800 Sobic008G072800 Sobic004G093700--Sobic008G072800 Sobic004G093700--Sobic007G183600 Sobic004G093700--Sobic004G250400 Sobic004G093700--Sobic008G142200 Sobic007G141900 Sobic007G141900 Sobic004G093700--Sobic007G141900 Sobic004G093700--Sobic002G324801 Sobic003G375500--Sobic005G027350 Sobic010G183350 Sobic010G183350 Sobic003G375500--Sobic010G183350 Sobic009G074800 Sobic009G074800 Sobic003G375500--Sobic009G074800 Sobic002G067900 Sobic002G067900 Sobic003G375500--Sobic002G067900 Sobic003G124400 Sobic003G124400 Sobic003G375500--Sobic003G124400 Sobic003G401700 Sobic003G401700 Sobic003G375500--Sobic003G401700 Sobic001G250750 Sobic001G250750 Sobic003G375500--Sobic001G250750 Sobic003G232600 Sobic003G232600 Sobic003G375500--Sobic003G232600 Sobic003G375500--Sobic009G026600 Sobic004G250400--Sobic003G063400 Sobic004G250400--Sobic009G026600 Sobic004G250400--Sobic004G227700 Sobic004G250400--Sobic001G370800 Sobic004G250400--Sobic004G093700 Sobic004G058400 Sobic004G058400 Sobic004G250400--Sobic004G058400 Sobic004G250400--Sobic004G082600 Sobic004G250400--Sobic010G012200 Sobic006G268900 Sobic006G268900 Sobic004G250400--Sobic006G268900 Sobic005G027350--Sobic009G026600 Sobic005G027350--Sobic003G375500 Sobic005G027350--Sobic009G074800 Sobic005G068000 Sobic005G068000 Sobic005G027350--Sobic005G068000 Sobic001G460900 Sobic001G460900 Sobic005G027350--Sobic001G460900 Sobic003G312800 Sobic003G312800 Sobic005G027350--Sobic003G312800 Sobic001G239000 Sobic001G239000 Sobic005G027350--Sobic001G239000 Sobic005G027350--Sobic008G037300 Sobic005G027350--Sobic003G401700 Sobic002G324801--Sobic008G072800 Sobic003G016950 Sobic003G016950 Sobic002G324801--Sobic003G016950 Sobic008G132500 Sobic008G132500 Sobic002G324801--Sobic008G132500 Sobic002G324801--Sobic004G093700 Sobic002G324801--Sobic003G375500 Sobic002G324801--Sobic010G100700 Sobic002G324801--Sobic007G141900 Sobic002G324801--Sobic001G250750 Sobic010G196466 Sobic010G196466 Sobic002G324801--Sobic010G196466
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.