Gene annotation
Transcriptome id Sobic.009G003800.2,Sobic.009G003800.1
Synonym RAB11c, ATRAB-A2A, ATRAB11C, ATRABA2A, RAB-A2A, Sb09g000540
Functional annotation ras-related protein, putative, expressed
UniProt C5YY06
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF484
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G09630 : RAB GTPase 11C
RAP-DB (Rice) LOC_Os05g01480.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a044235 , Zm00025a037063 , Zm00025a040990 , Zm00025a038289 , Zm00025a008844 , Zm00025a042339 , Zm00025a008978 , Zm00025a016417 , Zm00025a044575 , Zm00025a039651 , Zm00025a043281 , Zm00025a051086
Brachypodium KQK10571 , KQK12398 , KQK12397 , KQJ96486 , KQK04867 , KQJ98137 , KQK08122 , KQK12193 , PNT73882 , KQK06841 , KQJ98073 , KQK09739 , KQK10572
Barley HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU1Hr1G001920.3 , HORVU1Hr1G001920.2 , HORVU1Hr1G001920.1 , HORVU5Hr1G056470.1 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8 , HORVU5Hr1G114250.1 , HORVU5Hr1G114250.2 , HORVU3Hr1G085710.4 , HORVU3Hr1G085710.2 , HORVU3Hr1G085710.3 , HORVU3Hr1G085710.1
Wheat TraesCS5D02G498600 , TraesCS1A02G015400 , TraesCS3B02G272300 , TraesCS3B02G396200 , TraesCS5A02G184100 , TraesCS1D02G405900 , TraesCS5D02G188900 , TraesCS3D02G357500 , TraesCS5B02G182200 , TraesCS4A02G343500 , TraesCS5D02G529500 , TraesCS1A02G398400 , TraesCS1B02G426300 , TraesCS1B02G018900 , TraesCS1D02G013300 , TraesCS5A02G485100 , TraesCS3A02G364100 , TraesCS3A02G247000 , TraesCS5B02G530800 , TraesCS5B02G498600 , TraesCS3D02G244500
Populus -


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cDNA sequences
Sobic.009G003800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G219000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WD-40 repeat family protein, putative, expressed -
2 Sobic.003G296000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
3 Sobic.009G122000 Annexin arabidopsis 3(PubMedID : 26320239)@annexin, putative, expressed -
4 Sobic.010G019500 cytochrome P450 86A1, putative, expressed -
5 Sobic.001G079000 - -
6 Sobic.008G037300 RCN1 Centroradialis-like1 homogous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
7 Sobic.002G336500 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed -
8 Sobic.010G187950 - -
9 Sobic.001G370800 - -
10 Sobic.004G068600 cytochrome P450 71D10, putative, expressed -
11 Sobic.009G026600 - -
12 Sobic.001G466300 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
13 Sobic.001G424650 - -
14 Sobic.004G250400 aluminum-activated malate transporter, putative, expressed -
15 Sobic.005G027350 - -
16 Sobic.004G306400 BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed -
17 Sobic.003G375500 PHD-finger domain containing protein, putative, expressed -
18 Sobic.001G239000 expressed protein -
19 Sobic.003G124400 - -
20 Sobic.009G088300 SHR5-receptor-like kinase, putative, expressed -


Gene co-expression network
sample Sobic009G003800 Sobic009G003800 Sobic007G219000 Sobic007G219000 Sobic009G003800--Sobic007G219000 Sobic003G296000 Sobic003G296000 Sobic009G003800--Sobic003G296000 Sobic009G122000 Sobic009G122000 Sobic009G003800--Sobic009G122000 Sobic010G019500 Sobic010G019500 Sobic009G003800--Sobic010G019500 Sobic001G079000 Sobic001G079000 Sobic009G003800--Sobic001G079000 Sobic008G037300 Sobic008G037300 Sobic009G003800--Sobic008G037300 Sobic002G336500 Sobic002G336500 Sobic009G003800--Sobic002G336500 Sobic010G187950 Sobic010G187950 Sobic009G003800--Sobic010G187950 Sobic001G370800 Sobic001G370800 Sobic009G003800--Sobic001G370800 Sobic007G219000--Sobic009G003800 Sobic007G219000--Sobic010G187950 Sobic007G219000--Sobic008G037300 Sobic002G274000 Sobic002G274000 Sobic007G219000--Sobic002G274000 Sobic007G219000--Sobic010G019500 Sobic004G167500 Sobic004G167500 Sobic007G219000--Sobic004G167500 Sobic002G426201 Sobic002G426201 Sobic007G219000--Sobic002G426201 Sobic007G219000--Sobic001G079000 Sobic002G228300 Sobic002G228300 Sobic007G219000--Sobic002G228300 Sobic004G227700 Sobic004G227700 Sobic003G296000--Sobic004G227700 Sobic003G296000--Sobic009G003800 Sobic009G026600 Sobic009G026600 Sobic003G296000--Sobic009G026600 Sobic003G063400 Sobic003G063400 Sobic003G296000--Sobic003G063400 Sobic004G093700 Sobic004G093700 Sobic003G296000--Sobic004G093700 Sobic003G375500 Sobic003G375500 Sobic003G296000--Sobic003G375500 Sobic004G250400 Sobic004G250400 Sobic003G296000--Sobic004G250400 Sobic005G027350 Sobic005G027350 Sobic003G296000--Sobic005G027350 Sobic002G324801 Sobic002G324801 Sobic003G296000--Sobic002G324801 Sobic005G110553 Sobic005G110553 Sobic009G122000--Sobic005G110553 Sobic003G149400 Sobic003G149400 Sobic009G122000--Sobic003G149400 Sobic001G424650 Sobic001G424650 Sobic009G122000--Sobic001G424650 Sobic004G224000 Sobic004G224000 Sobic009G122000--Sobic004G224000 Sobic007G010400 Sobic007G010400 Sobic009G122000--Sobic007G010400 Sobic008G065700 Sobic008G065700 Sobic009G122000--Sobic008G065700 Sobic007G210200 Sobic007G210200 Sobic009G122000--Sobic007G210200 Sobic009G122000--Sobic010G019500 Sobic001G367900 Sobic001G367900 Sobic009G122000--Sobic001G367900 Sobic004G068600 Sobic004G068600 Sobic010G019500--Sobic004G068600 Sobic002G110600 Sobic002G110600 Sobic010G019500--Sobic002G110600 Sobic009G183650 Sobic009G183650 Sobic010G019500--Sobic009G183650 Sobic008G103400 Sobic008G103400 Sobic010G019500--Sobic008G103400 Sobic004G315400 Sobic004G315400 Sobic010G019500--Sobic004G315400 Sobic007G183600 Sobic007G183600 Sobic010G019500--Sobic007G183600 Sobic010G019500--Sobic001G424650 Sobic004G267400 Sobic004G267400 Sobic010G019500--Sobic004G267400 Sobic010G019500--Sobic005G110553 Sobic003G124400 Sobic003G124400 Sobic001G079000--Sobic003G124400 Sobic001G239000 Sobic001G239000 Sobic001G079000--Sobic001G239000 Sobic001G079000--Sobic009G026600 Sobic005G150501 Sobic005G150501 Sobic001G079000--Sobic005G150501 Sobic001G079000--Sobic003G375500 Sobic001G079000--Sobic005G027350 Sobic001G079000--Sobic008G037300 Sobic003G401700 Sobic003G401700 Sobic001G079000--Sobic003G401700 Sobic005G068000 Sobic005G068000 Sobic001G079000--Sobic005G068000 Sobic008G037300--Sobic005G068000 Sobic008G037300--Sobic009G026600 Sobic002G309300 Sobic002G309300 Sobic008G037300--Sobic002G309300 Sobic008G037300--Sobic003G124400 Sobic008G037300--Sobic001G370800 Sobic008G037300--Sobic005G027350 Sobic004G072201 Sobic004G072201 Sobic008G037300--Sobic004G072201 Sobic001G038700 Sobic001G038700 Sobic008G037300--Sobic001G038700 Sobic008G037300--Sobic001G239000 Sobic010G168100 Sobic010G168100 Sobic002G336500--Sobic010G168100 Sobic002G336500--Sobic007G010400 Sobic002G043201 Sobic002G043201 Sobic002G336500--Sobic002G043201 Sobic002G336500--Sobic010G187950 Sobic002G336500--Sobic009G122000 Sobic004G081300 Sobic004G081300 Sobic002G336500--Sobic004G081300 Sobic003G025300 Sobic003G025300 Sobic002G336500--Sobic003G025300 Sobic003G438100 Sobic003G438100 Sobic002G336500--Sobic003G438100 Sobic002G336500--Sobic003G149400 Sobic001G228500 Sobic001G228500 Sobic010G187950--Sobic001G228500 Sobic007G224700 Sobic007G224700 Sobic010G187950--Sobic007G224700 Sobic010G187950--Sobic002G043201 Sobic010G015400 Sobic010G015400 Sobic010G187950--Sobic010G015400 Sobic008G153300 Sobic008G153300 Sobic010G187950--Sobic008G153300 Sobic010G187950--Sobic004G167500 Sobic010G187950--Sobic002G426201 Sobic002G215600 Sobic002G215600 Sobic010G187950--Sobic002G215600 Sobic010G187950--Sobic002G274000 Sobic001G370800--Sobic009G026600 Sobic004G173200 Sobic004G173200 Sobic001G370800--Sobic004G173200 Sobic001G370800--Sobic001G038700 Sobic001G442000 Sobic001G442000 Sobic001G370800--Sobic001G442000 Sobic001G370800--Sobic002G309300 Sobic009G088300 Sobic009G088300 Sobic001G370800--Sobic009G088300 Sobic004G218400 Sobic004G218400 Sobic001G370800--Sobic004G218400 Sobic006G255200 Sobic006G255200 Sobic001G370800--Sobic006G255200 Sobic003G263900 Sobic003G263900 Sobic001G370800--Sobic003G263900
Octagon: transcription factors


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