Gene annotation
Transcriptome id Sobic.007G219000.1
Synonym Sb07g028550
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
WD-40 repeat family protein, putative, expressed
UniProt C5YJA4
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF456
NCBI CDD KOG4532; WD40-like repeat containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G13340 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os08g38880.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a004995
Brachypodium KQJ98838
Barley HORVU7Hr1G048900.4 , HORVU7Hr1G048900.5 , HORVU7Hr1G048900.6 , HORVU7Hr1G048900.7 , HORVU7Hr1G048900.1 , HORVU7Hr1G048900.2 , HORVU7Hr1G048900.3 , HORVU7Hr1G048900.8 , HORVU7Hr1G048900.9 , HORVU7Hr1G048900.12 , HORVU7Hr1G048900.10 , HORVU7Hr1G048900.11
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G003800 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.010G187950 - -
3 Sobic.008G037300 RCN1 Centroradialis-like1 homogous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
4 Sobic.002G274000 OsSub59 - Putative Subtilisin homologue, expressed -
5 Sobic.010G019500 cytochrome P450 86A1, putative, expressed -
6 Sobic.004G167500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G426201 - -
8 Sobic.001G079000 - -
9 Sobic.002G228300 - -
10 Sobic.002G336500 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed -
11 Sobic.003G040300 cytochrome P450, putative, expressed -
12 Sobic.003G067600 receptor kinase, putative, expressed -
13 Sobic.006G268100 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
14 Sobic.004G089801 - -
15 Sobic.003G124400 - -
16 Sobic.001G454600 expressed protein -
17 Sobic.002G215600 BRCA1 C Terminus domain containing protein, expressed -
18 Sobic.005G070951 - -
19 Sobic.006G138300 EF hand family protein, putative, expressed -
20 Sobic.008G165800 Protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic007G219000 Sobic007G219000 Sobic009G003800 Sobic009G003800 Sobic007G219000--Sobic009G003800 Sobic010G187950 Sobic010G187950 Sobic007G219000--Sobic010G187950 Sobic008G037300 Sobic008G037300 Sobic007G219000--Sobic008G037300 Sobic002G274000 Sobic002G274000 Sobic007G219000--Sobic002G274000 Sobic010G019500 Sobic010G019500 Sobic007G219000--Sobic010G019500 Sobic004G167500 Sobic004G167500 Sobic007G219000--Sobic004G167500 Sobic002G426201 Sobic002G426201 Sobic007G219000--Sobic002G426201 Sobic001G079000 Sobic001G079000 Sobic007G219000--Sobic001G079000 Sobic002G228300 Sobic002G228300 Sobic007G219000--Sobic002G228300 Sobic009G003800--Sobic007G219000 Sobic003G296000 Sobic003G296000 Sobic009G003800--Sobic003G296000 Sobic009G122000 Sobic009G122000 Sobic009G003800--Sobic009G122000 Sobic009G003800--Sobic010G019500 Sobic009G003800--Sobic001G079000 Sobic009G003800--Sobic008G037300 Sobic002G336500 Sobic002G336500 Sobic009G003800--Sobic002G336500 Sobic009G003800--Sobic010G187950 Sobic001G370800 Sobic001G370800 Sobic009G003800--Sobic001G370800 Sobic001G228500 Sobic001G228500 Sobic010G187950--Sobic001G228500 Sobic007G224700 Sobic007G224700 Sobic010G187950--Sobic007G224700 Sobic002G043201 Sobic002G043201 Sobic010G187950--Sobic002G043201 Sobic010G015400 Sobic010G015400 Sobic010G187950--Sobic010G015400 Sobic008G153300 Sobic008G153300 Sobic010G187950--Sobic008G153300 Sobic010G187950--Sobic004G167500 Sobic010G187950--Sobic002G426201 Sobic002G215600 Sobic002G215600 Sobic010G187950--Sobic002G215600 Sobic010G187950--Sobic002G274000 Sobic005G068000 Sobic005G068000 Sobic008G037300--Sobic005G068000 Sobic009G026600 Sobic009G026600 Sobic008G037300--Sobic009G026600 Sobic002G309300 Sobic002G309300 Sobic008G037300--Sobic002G309300 Sobic003G124400 Sobic003G124400 Sobic008G037300--Sobic003G124400 Sobic008G037300--Sobic001G370800 Sobic005G027350 Sobic005G027350 Sobic008G037300--Sobic005G027350 Sobic004G072201 Sobic004G072201 Sobic008G037300--Sobic004G072201 Sobic001G038700 Sobic001G038700 Sobic008G037300--Sobic001G038700 Sobic001G239000 Sobic001G239000 Sobic008G037300--Sobic001G239000 Sobic004G218400 Sobic004G218400 Sobic002G274000--Sobic004G218400 Sobic001G334400 Sobic001G334400 Sobic002G274000--Sobic001G334400 Sobic006G268100 Sobic006G268100 Sobic002G274000--Sobic006G268100 Sobic003G067600 Sobic003G067600 Sobic002G274000--Sobic003G067600 Sobic003G001650 Sobic003G001650 Sobic002G274000--Sobic003G001650 Sobic004G173200 Sobic004G173200 Sobic002G274000--Sobic004G173200 Sobic005G110553 Sobic005G110553 Sobic002G274000--Sobic005G110553 Sobic002G274000--Sobic002G309300 Sobic002G274000--Sobic001G370800 Sobic004G068600 Sobic004G068600 Sobic010G019500--Sobic004G068600 Sobic002G110600 Sobic002G110600 Sobic010G019500--Sobic002G110600 Sobic009G183650 Sobic009G183650 Sobic010G019500--Sobic009G183650 Sobic008G103400 Sobic008G103400 Sobic010G019500--Sobic008G103400 Sobic004G315400 Sobic004G315400 Sobic010G019500--Sobic004G315400 Sobic007G183600 Sobic007G183600 Sobic010G019500--Sobic007G183600 Sobic001G424650 Sobic001G424650 Sobic010G019500--Sobic001G424650 Sobic004G267400 Sobic004G267400 Sobic010G019500--Sobic004G267400 Sobic010G019500--Sobic005G110553 Sobic003G059500 Sobic003G059500 Sobic004G167500--Sobic003G059500 Sobic004G167500--Sobic002G215600 Sobic006G049000 Sobic006G049000 Sobic004G167500--Sobic006G049000 Sobic004G167500--Sobic010G187950 Sobic003G356500 Sobic003G356500 Sobic004G167500--Sobic003G356500 Sobic004G167500--Sobic008G153300 Sobic001G071500 Sobic001G071500 Sobic004G167500--Sobic001G071500 Sobic003G438100 Sobic003G438100 Sobic004G167500--Sobic003G438100 Sobic001G468900 Sobic001G468900 Sobic004G167500--Sobic001G468900 Sobic002G426201--Sobic010G187950 Sobic009G160100 Sobic009G160100 Sobic002G426201--Sobic009G160100 Sobic006G138300 Sobic006G138300 Sobic002G426201--Sobic006G138300 Sobic002G426201--Sobic003G067600 Sobic002G426201--Sobic002G228300 Sobic001G454600 Sobic001G454600 Sobic002G426201--Sobic001G454600 Sobic001G061300 Sobic001G061300 Sobic002G426201--Sobic001G061300 Sobic002G426201--Sobic010G015400 Sobic002G426201--Sobic007G224700 Sobic001G079000--Sobic003G124400 Sobic001G079000--Sobic001G239000 Sobic001G079000--Sobic009G026600 Sobic005G150501 Sobic005G150501 Sobic001G079000--Sobic005G150501 Sobic003G375500 Sobic003G375500 Sobic001G079000--Sobic003G375500 Sobic001G079000--Sobic005G027350 Sobic001G079000--Sobic008G037300 Sobic003G401700 Sobic003G401700 Sobic001G079000--Sobic003G401700 Sobic001G079000--Sobic005G068000 Sobic002G228300--Sobic003G067600 Sobic002G228300--Sobic005G068000 Sobic002G228300--Sobic001G239000 Sobic002G228300--Sobic003G124400 Sobic002G228300--Sobic004G218400 Sobic010G129100 Sobic010G129100 Sobic002G228300--Sobic010G129100 Sobic009G037050 Sobic009G037050 Sobic002G228300--Sobic009G037050 Sobic002G228300--Sobic008G037300 Sobic002G127300 Sobic002G127300 Sobic002G228300--Sobic002G127300
Octagon: transcription factors


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