Gene annotation
Transcriptome id Sobic.006G138300.1
Synonym
Functional annotation EF hand family protein, putative, expressed
UniProt A0A1B6PLW0
Pfam PF00036 PF13833
Panther DB PTHR12294 PTHR12294:SF11
NCBI CDD KOG2643; Ca2+ binding protein, contains EF-hand motifs
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT4G32060 : calcium-binding EF hand family protein
RAP-DB (Rice) LOC_Os04g42430.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a010771 , Zm00025a056423
Brachypodium KQJ83420
Barley -
Wheat TraesCS2D02G356300 , TraesCS2B02G376700 , TraesCS2B02G376700 , TraesCS2B02G376700
Populus PNS92249 , PNS92246 , PNS92247 , PNS92248


JBrowse

Open New Page


cDNA sequences
Sobic.006G138300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G067600 receptor kinase, putative, expressed -
2 Sobic.004G173200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
3 Sobic.010G000200 expressed protein -
4 Sobic.003G262600 OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
5 Sobic.002G206900 GEX2, putative, expressed -
6 Sobic.004G127600 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
7 Sobic.001G370800 - -
8 Sobic.004G218400 - -
9 Sobic.002G274000 OsSub59 - Putative Subtilisin homologue, expressed -
10 Sobic.003G362800 - -
11 Sobic.009G160100 "Expressed in drought, salt and oxidative stress"(PubMedID : 29862293)@amino acid kinase, putative, expressed K12657: ALDH18A1, delta-1-pyrroline-5-carboxylate synthetase
12 Sobic.008G177100 expressed protein -
13 Sobic.007G002500 OsFBT12 - F-box and tubby domain containing protein, expressed -
14 Sobic.001G038700 membrane associated DUF588 domain containing protein, putative, expressed -
15 Sobic.002G127300 - -
16 Sobic.006G249600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
17 Sobic.002G228300 - -
18 Sobic.004G082600 OsFBX126 - F-box domain containing protein, expressed -
19 Sobic.008G192900 -(PubMedID : 29751546)@sodium/hydrogen exchanger 7, putative, expressed -
20 Sobic.002G187900 expressed protein -


Gene co-expression network
sample Sobic006G138300 Sobic006G138300 Sobic003G067600 Sobic003G067600 Sobic006G138300--Sobic003G067600 Sobic004G173200 Sobic004G173200 Sobic006G138300--Sobic004G173200 Sobic010G000200 Sobic010G000200 Sobic006G138300--Sobic010G000200 Sobic003G262600 Sobic003G262600 Sobic006G138300--Sobic003G262600 Sobic002G206900 Sobic002G206900 Sobic006G138300--Sobic002G206900 Sobic004G127600 Sobic004G127600 Sobic006G138300--Sobic004G127600 Sobic001G370800 Sobic001G370800 Sobic006G138300--Sobic001G370800 Sobic004G218400 Sobic004G218400 Sobic006G138300--Sobic004G218400 Sobic002G274000 Sobic002G274000 Sobic006G138300--Sobic002G274000 Sobic003G067600--Sobic004G218400 Sobic002G228300 Sobic002G228300 Sobic003G067600--Sobic002G228300 Sobic003G067600--Sobic002G274000 Sobic003G067600--Sobic006G138300 Sobic003G067600--Sobic001G370800 Sobic001G038700 Sobic001G038700 Sobic003G067600--Sobic001G038700 Sobic001G334400 Sobic001G334400 Sobic003G067600--Sobic001G334400 Sobic006G268100 Sobic006G268100 Sobic003G067600--Sobic006G268100 Sobic003G304000 Sobic003G304000 Sobic003G067600--Sobic003G304000 Sobic004G173200--Sobic010G000200 Sobic004G173200--Sobic003G262600 Sobic002G398600 Sobic002G398600 Sobic004G173200--Sobic002G398600 Sobic004G173200--Sobic001G370800 Sobic002G187900 Sobic002G187900 Sobic004G173200--Sobic002G187900 Sobic003G362800 Sobic003G362800 Sobic004G173200--Sobic003G362800 Sobic006G249600 Sobic006G249600 Sobic004G173200--Sobic006G249600 Sobic001G212900 Sobic001G212900 Sobic004G173200--Sobic001G212900 Sobic002G001500 Sobic002G001500 Sobic004G173200--Sobic002G001500 Sobic010G000200--Sobic004G173200 Sobic010G012200 Sobic010G012200 Sobic010G000200--Sobic010G012200 Sobic010G000200--Sobic003G362800 Sobic010G000200--Sobic001G212900 Sobic003G155000 Sobic003G155000 Sobic010G000200--Sobic003G155000 Sobic010G000200--Sobic003G262600 Sobic010G000200--Sobic001G370800 Sobic010G000200--Sobic002G187900 Sobic003G225200 Sobic003G225200 Sobic010G000200--Sobic003G225200 Sobic003G262600--Sobic003G155000 Sobic003G262600--Sobic004G173200 Sobic003G253700 Sobic003G253700 Sobic003G262600--Sobic003G253700 Sobic003G262600--Sobic006G249600 Sobic003G262600--Sobic010G000200 Sobic003G262600--Sobic002G187900 Sobic003G365200 Sobic003G365200 Sobic003G262600--Sobic003G365200 Sobic009G223900 Sobic009G223900 Sobic003G262600--Sobic009G223900 Sobic003G262600--Sobic003G362800 Sobic001G454600 Sobic001G454600 Sobic002G206900--Sobic001G454600 Sobic002G206900--Sobic003G155000 Sobic003G155800 Sobic003G155800 Sobic002G206900--Sobic003G155800 Sobic002G206900--Sobic003G362800 Sobic002G206900--Sobic003G253700 Sobic001G483001 Sobic001G483001 Sobic002G206900--Sobic001G483001 Sobic001G520000 Sobic001G520000 Sobic002G206900--Sobic001G520000 Sobic008G170800 Sobic008G170800 Sobic002G206900--Sobic008G170800 Sobic009G252600 Sobic009G252600 Sobic002G206900--Sobic009G252600 Sobic004G127600--Sobic002G187900 Sobic003G263900 Sobic003G263900 Sobic004G127600--Sobic003G263900 Sobic006G255200 Sobic006G255200 Sobic004G127600--Sobic006G255200 Sobic001G442000 Sobic001G442000 Sobic004G127600--Sobic001G442000 Sobic004G127600--Sobic001G212900 Sobic001G109400 Sobic001G109400 Sobic004G127600--Sobic001G109400 Sobic002G374000 Sobic002G374000 Sobic004G127600--Sobic002G374000 Sobic004G072201 Sobic004G072201 Sobic004G127600--Sobic004G072201 Sobic004G127600--Sobic001G038700 Sobic009G026600 Sobic009G026600 Sobic001G370800--Sobic009G026600 Sobic001G370800--Sobic004G173200 Sobic001G370800--Sobic001G038700 Sobic001G370800--Sobic001G442000 Sobic002G309300 Sobic002G309300 Sobic001G370800--Sobic002G309300 Sobic009G088300 Sobic009G088300 Sobic001G370800--Sobic009G088300 Sobic001G370800--Sobic004G218400 Sobic001G370800--Sobic006G255200 Sobic001G370800--Sobic003G263900 Sobic004G218400--Sobic002G309300 Sobic004G218400--Sobic001G038700 Sobic004G218400--Sobic006G268100 Sobic004G218400--Sobic001G370800 Sobic004G218400--Sobic006G255200 Sobic003G001650 Sobic003G001650 Sobic004G218400--Sobic003G001650 Sobic004G218400--Sobic002G274000 Sobic004G218400--Sobic003G067600 Sobic004G218400--Sobic004G072201 Sobic002G274000--Sobic004G218400 Sobic002G274000--Sobic001G334400 Sobic002G274000--Sobic006G268100 Sobic002G274000--Sobic003G067600 Sobic002G274000--Sobic003G001650 Sobic002G274000--Sobic004G173200 Sobic005G110553 Sobic005G110553 Sobic002G274000--Sobic005G110553 Sobic002G274000--Sobic002G309300 Sobic002G274000--Sobic001G370800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.