Gene annotation
Transcriptome id Sobic.001G476600.1
Synonym Sb01g044650
Functional annotation Zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WUU9
Pfam PF13639
Panther DB PTHR14155
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology K10664; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g08920.1 : Zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001019 , Zm00025a047331 , Zm00025a014119 , Zm00025a053229
Brachypodium PNT64755
Barley HORVU4Hr1G078260.1 , HORVU5Hr1G069980.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G312800 - -
2 Sobic.001G190900 ABCG protein(PubMedID : 21265893)@"Orthologous gene of wheat Lr34 gene, expressed in accession AusTRCF 302546, but not expreesed in BTx623 possibly due to transposon insertions in intron 4"(PubMedID : 23117720)@pleiotropic drug resistance protein 15, putative, expressed -
3 Sobic.003G312600 expressed protein -
4 Sobic.001G239000 expressed protein -
5 Sobic.009G026600 - -
6 Sobic.001G370800 - -
7 Sobic.003G312900 - -
8 Sobic.005G027350 - -
9 Sobic.009G094200 - -
10 Sobic.005G068000 expressed protein -
11 Sobic.003G263900 reticulon domain containing protein, putative, expressed -
12 Sobic.001G001800 expressed protein -
13 Sobic.004G033650 - -
14 Sobic.001G038700 membrane associated DUF588 domain containing protein, putative, expressed -
15 Sobic.004G093700 tetraspanin family protein, putative, expressed -
16 Sobic.008G142200 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
17 Sobic.010G183350 - -
18 Sobic.005G137500 - -
19 Sobic.001G191500 expressed protein -
20 Sobic.004G250400 aluminum-activated malate transporter, putative, expressed -


Gene co-expression network
sample Sobic001G476600 Sobic001G476600 Sobic003G312800 Sobic003G312800 Sobic001G476600--Sobic003G312800 Sobic001G190900 Sobic001G190900 Sobic001G476600--Sobic001G190900 Sobic003G312600 Sobic003G312600 Sobic001G476600--Sobic003G312600 Sobic001G239000 Sobic001G239000 Sobic001G476600--Sobic001G239000 Sobic009G026600 Sobic009G026600 Sobic001G476600--Sobic009G026600 Sobic001G370800 Sobic001G370800 Sobic001G476600--Sobic001G370800 Sobic003G312900 Sobic003G312900 Sobic001G476600--Sobic003G312900 Sobic005G027350 Sobic005G027350 Sobic001G476600--Sobic005G027350 Sobic009G094200 Sobic009G094200 Sobic001G476600--Sobic009G094200 Sobic003G312800--Sobic003G312900 Sobic002G398300 Sobic002G398300 Sobic003G312800--Sobic002G398300 Sobic005G068000 Sobic005G068000 Sobic003G312800--Sobic005G068000 Sobic003G312800--Sobic001G190900 Sobic003G312800--Sobic003G312600 Sobic004G209100 Sobic004G209100 Sobic003G312800--Sobic004G209100 Sobic003G312800--Sobic001G239000 Sobic005G180850 Sobic005G180850 Sobic003G312800--Sobic005G180850 Sobic003G312800--Sobic005G027350 Sobic001G190900--Sobic003G312900 Sobic009G137401 Sobic009G137401 Sobic001G190900--Sobic009G137401 Sobic001G191500 Sobic001G191500 Sobic001G190900--Sobic001G191500 Sobic001G190900--Sobic003G312800 Sobic001G190900--Sobic009G094200 Sobic001G190900--Sobic003G312600 Sobic006G072701 Sobic006G072701 Sobic001G190900--Sobic006G072701 Sobic001G190900--Sobic001G476600 Sobic008G142200 Sobic008G142200 Sobic001G190900--Sobic008G142200 Sobic003G312600--Sobic003G312800 Sobic003G312600--Sobic002G398300 Sobic003G312600--Sobic001G190900 Sobic003G312600--Sobic001G239000 Sobic003G312600--Sobic003G312900 Sobic003G312600--Sobic001G476600 Sobic007G133733 Sobic007G133733 Sobic003G312600--Sobic007G133733 Sobic003G312600--Sobic004G209100 Sobic003G312600--Sobic005G027350 Sobic001G239000--Sobic005G068000 Sobic003G124400 Sobic003G124400 Sobic001G239000--Sobic003G124400 Sobic001G239000--Sobic003G312800 Sobic001G239000--Sobic005G027350 Sobic001G239000--Sobic003G312600 Sobic001G239000--Sobic002G398300 Sobic008G037300 Sobic008G037300 Sobic001G239000--Sobic008G037300 Sobic001G239000--Sobic001G476600 Sobic001G079000 Sobic001G079000 Sobic001G239000--Sobic001G079000 Sobic009G026600--Sobic001G370800 Sobic003G063400 Sobic003G063400 Sobic009G026600--Sobic003G063400 Sobic009G026600--Sobic005G027350 Sobic001G038700 Sobic001G038700 Sobic009G026600--Sobic001G038700 Sobic004G250400 Sobic004G250400 Sobic009G026600--Sobic004G250400 Sobic001G001800 Sobic001G001800 Sobic009G026600--Sobic001G001800 Sobic009G026600--Sobic008G037300 Sobic002G309300 Sobic002G309300 Sobic009G026600--Sobic002G309300 Sobic010G012200 Sobic010G012200 Sobic009G026600--Sobic010G012200 Sobic001G370800--Sobic009G026600 Sobic004G173200 Sobic004G173200 Sobic001G370800--Sobic004G173200 Sobic001G370800--Sobic001G038700 Sobic001G442000 Sobic001G442000 Sobic001G370800--Sobic001G442000 Sobic001G370800--Sobic002G309300 Sobic009G088300 Sobic009G088300 Sobic001G370800--Sobic009G088300 Sobic004G218400 Sobic004G218400 Sobic001G370800--Sobic004G218400 Sobic006G255200 Sobic006G255200 Sobic001G370800--Sobic006G255200 Sobic003G263900 Sobic003G263900 Sobic001G370800--Sobic003G263900 Sobic003G312900--Sobic003G312800 Sobic003G312900--Sobic004G209100 Sobic001G229850 Sobic001G229850 Sobic003G312900--Sobic001G229850 Sobic003G312900--Sobic005G180850 Sobic003G312900--Sobic001G190900 Sobic008G132500 Sobic008G132500 Sobic003G312900--Sobic008G132500 Sobic001G226401 Sobic001G226401 Sobic003G312900--Sobic001G226401 Sobic005G118800 Sobic005G118800 Sobic003G312900--Sobic005G118800 Sobic003G232600 Sobic003G232600 Sobic003G312900--Sobic003G232600 Sobic005G027350--Sobic009G026600 Sobic003G375500 Sobic003G375500 Sobic005G027350--Sobic003G375500 Sobic009G074800 Sobic009G074800 Sobic005G027350--Sobic009G074800 Sobic005G027350--Sobic005G068000 Sobic001G460900 Sobic001G460900 Sobic005G027350--Sobic001G460900 Sobic005G027350--Sobic003G312800 Sobic005G027350--Sobic001G239000 Sobic005G027350--Sobic008G037300 Sobic003G401700 Sobic003G401700 Sobic005G027350--Sobic003G401700 Sobic009G094200--Sobic008G142200 Sobic009G094200--Sobic001G001800 Sobic004G227700 Sobic004G227700 Sobic009G094200--Sobic004G227700 Sobic009G094200--Sobic003G263900 Sobic004G082600 Sobic004G082600 Sobic009G094200--Sobic004G082600 Sobic009G094200--Sobic001G190900 Sobic007G141900 Sobic007G141900 Sobic009G094200--Sobic007G141900 Sobic009G094200--Sobic001G038700 Sobic009G094200--Sobic009G026600
Octagon: transcription factors


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