Gene annotation
Transcriptome id Sobic.003G350000.1
Synonym Sb03g039300
Functional annotation pentatricopeptide, putative, expressed
UniProt C5XP44
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF404
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42450 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g62220.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a026934
Brachypodium KQK10502
Barley HORVU6Hr1G058730.1 , HORVU3Hr1G086650.6 , HORVU3Hr1G086650.5 , HORVU3Hr1G086650.2 , HORVU3Hr1G086650.3 , HORVU3Hr1G086650.1 , HORVU3Hr1G086600.1 , HORVU3Hr1G086650.4 , HORVU6Hr1G015690.17 , HORVU6Hr1G015690.16 , HORVU6Hr1G015690.15 , HORVU6Hr1G015690.14 , HORVU6Hr1G015690.13 , HORVU6Hr1G015690.12 , HORVU6Hr1G015690.11 , HORVU6Hr1G015690.10 , HORVU6Hr1G015690.18 , HORVU6Hr1G015690.9 , HORVU6Hr1G015690.8 , HORVU6Hr1G015690.7 , HORVU6Hr1G015690.6 , HORVU6Hr1G015690.5 , HORVU6Hr1G015690.4 , HORVU6Hr1G015690.3 , HORVU6Hr1G015690.2 , HORVU6Hr1G015690.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G083650 - -
2 Sobic.010G263101 - -
3 Sobic.010G067950 - K14292: trimethylguanosine synthase
4 Sobic.006G123100 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
5 Sobic.010G275600 resistance protein, putative, expressed -
6 Sobic.001G037550 - -
7 Sobic.007G206550 - -
8 Sobic.004G355401 - -
9 Sobic.007G157550 - -
10 Sobic.001G463650 - -
11 Sobic.001G391000 aspartic proteinase nepenthesin precursor, putative, expressed -
12 Sobic.002G367850 - -
13 Sobic.006G249800 MBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.005G066800 - -
15 Sobic.004G347866 - -
16 Sobic.004G206900 expressed protein -
17 Sobic.001G354900 - -
18 Sobic.001G523500 DUF623 domain containing protein, expressed -
19 Sobic.001G075900 bZIP transcription factor domain containing protein, expressed -
20 Sobic.001G102901 - -


Gene co-expression network
sample Sobic003G350000 Sobic003G350000 Sobic008G083650 Sobic008G083650 Sobic003G350000--Sobic008G083650 Sobic010G263101 Sobic010G263101 Sobic003G350000--Sobic010G263101 Sobic010G067950 Sobic010G067950 Sobic003G350000--Sobic010G067950 Sobic006G123100 Sobic006G123100 Sobic003G350000--Sobic006G123100 Sobic010G275600 Sobic010G275600 Sobic003G350000--Sobic010G275600 Sobic001G037550 Sobic001G037550 Sobic003G350000--Sobic001G037550 Sobic007G206550 Sobic007G206550 Sobic003G350000--Sobic007G206550 Sobic004G355401 Sobic004G355401 Sobic003G350000--Sobic004G355401 Sobic007G157550 Sobic007G157550 Sobic003G350000--Sobic007G157550 Sobic008G083650--Sobic006G123100 Sobic001G463650 Sobic001G463650 Sobic008G083650--Sobic001G463650 Sobic008G083650--Sobic003G350000 Sobic008G083650--Sobic004G355401 Sobic002G367850 Sobic002G367850 Sobic008G083650--Sobic002G367850 Sobic008G083650--Sobic010G067950 Sobic008G083650--Sobic010G263101 Sobic008G083650--Sobic007G157550 Sobic005G066800 Sobic005G066800 Sobic008G083650--Sobic005G066800 Sobic006G249800 Sobic006G249800 Sobic010G263101--Sobic006G249800 Sobic010G263101--Sobic003G350000 Sobic010G263101--Sobic010G275600 Sobic010G263101--Sobic008G083650 Sobic010G263101--Sobic001G037550 Sobic010G263101--Sobic001G463650 Sobic010G263101--Sobic006G123100 Sobic001G102901 Sobic001G102901 Sobic010G263101--Sobic001G102901 Sobic010G263101--Sobic010G067950 Sobic010G067950--Sobic008G083650 Sobic010G067950--Sobic007G157550 Sobic010G067950--Sobic003G350000 Sobic010G067950--Sobic004G355401 Sobic010G067950--Sobic001G102901 Sobic010G067950--Sobic007G206550 Sobic010G067950--Sobic005G066800 Sobic004G347866 Sobic004G347866 Sobic010G067950--Sobic004G347866 Sobic010G067950--Sobic002G367850 Sobic006G123100--Sobic008G083650 Sobic006G123100--Sobic001G463650 Sobic006G123100--Sobic006G249800 Sobic006G123100--Sobic003G350000 Sobic006G123100--Sobic010G067950 Sobic006G123100--Sobic004G355401 Sobic004G206900 Sobic004G206900 Sobic006G123100--Sobic004G206900 Sobic004G128800 Sobic004G128800 Sobic006G123100--Sobic004G128800 Sobic002G339250 Sobic002G339250 Sobic006G123100--Sobic002G339250 Sobic010G275600--Sobic001G037550 Sobic010G275600--Sobic010G263101 Sobic010G275600--Sobic003G350000 Sobic008G042400 Sobic008G042400 Sobic010G275600--Sobic008G042400 Sobic003G079700 Sobic003G079700 Sobic010G275600--Sobic003G079700 Sobic001G075900 Sobic001G075900 Sobic010G275600--Sobic001G075900 Sobic010G275600--Sobic008G083650 Sobic003G368450 Sobic003G368450 Sobic010G275600--Sobic003G368450 Sobic010G236800 Sobic010G236800 Sobic010G275600--Sobic010G236800 Sobic001G037550--Sobic010G275600 Sobic008G108000 Sobic008G108000 Sobic001G037550--Sobic008G108000 Sobic001G037550--Sobic010G263101 Sobic001G040701 Sobic001G040701 Sobic001G037550--Sobic001G040701 Sobic001G037550--Sobic008G083650 Sobic001G037550--Sobic001G075900 Sobic007G124800 Sobic007G124800 Sobic001G037550--Sobic007G124800 Sobic008G086300 Sobic008G086300 Sobic001G037550--Sobic008G086300 Sobic001G037550--Sobic002G367850 Sobic007G206550--Sobic007G157550 Sobic007G206550--Sobic004G347866 Sobic001G179680 Sobic001G179680 Sobic007G206550--Sobic001G179680 Sobic001G457100 Sobic001G457100 Sobic007G206550--Sobic001G457100 Sobic004G089700 Sobic004G089700 Sobic007G206550--Sobic004G089700 Sobic002G048250 Sobic002G048250 Sobic007G206550--Sobic002G048250 Sobic007G183000 Sobic007G183000 Sobic007G206550--Sobic007G183000 Sobic007G206550--Sobic004G355401 Sobic004G224300 Sobic004G224300 Sobic007G206550--Sobic004G224300 Sobic004G355401--Sobic001G457100 Sobic004G355401--Sobic007G157550 Sobic004G355401--Sobic004G347866 Sobic004G355401--Sobic004G206900 Sobic004G355401--Sobic005G066800 Sobic004G355401--Sobic007G206550 Sobic009G223700 Sobic009G223700 Sobic004G355401--Sobic009G223700 Sobic006G169300 Sobic006G169300 Sobic004G355401--Sobic006G169300 Sobic004G355401--Sobic002G339250 Sobic007G157550--Sobic004G347866 Sobic007G157550--Sobic002G048250 Sobic007G157550--Sobic001G457100 Sobic007G157550--Sobic004G089700 Sobic007G157550--Sobic007G183000 Sobic007G157550--Sobic009G223700 Sobic007G157550--Sobic001G179680 Sobic007G157550--Sobic002G339250 Sobic004G226300 Sobic004G226300 Sobic007G157550--Sobic004G226300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.