Gene annotation
Transcriptome id Sobic.004G009400.1
Synonym ATNRT2.4, NRT2.4, Sb04g000990
Functional annotation transporter, major facilitator family, putative, expressed
UniProt C5XS80
Pfam PF07690
Panther DB PTHR23515 PTHR23515:SF2
NCBI CDD -
KEGG Orthology K02575; NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G60770 : nitrate transporter 2.4
RAP-DB (Rice) LOC_Os02g02190.1 : transporter, major facilitator family, putative, expressed
MaizeGDB (Corn) Zm00025a035073 , Zm00025a035072 , Zm00025a018689
Brachypodium KQJ92869 , KQK06399 , KQJ92870 , PNT65714 , PNT65713
Barley HORVU6Hr1G005600.1 , HORVU6Hr1G005570.1 , HORVU6Hr1G005600.2 , HORVU6Hr1G005780.1 , HORVU6Hr1G005600.3 , HORVU6Hr1G005720.1 , HORVU6Hr1G005930.1 , HORVU6Hr1G005580.1
Wheat TraesCS6B02G044500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G063400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
2 Sobic.003G053600 hydrolase, alpha/beta fold family protein, putative, expressed -
3 Sobic.002G053700 auxin-induced protein 5NG4, putative, expressed -
4 Sobic.007G057400 - -
5 Sobic.006G277700 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.007G015200 cytochrome P450, putative, expressed -
7 Sobic.003G322100 polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
8 Sobic.005G066432 - -
9 Sobic.001G360500 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.007G073000 - -
11 Sobic.005G069500 OsWAK92 - OsWAK receptor-like protein kinase, expressed -
12 Sobic.005G206000 dirigent, putative, expressed -
13 Sobic.007G057300 - -
14 Sobic.005G177400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
15 Sobic.003G020200 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.010G031700 thaumatin, putative, expressed -
17 Sobic.005G072900 stress responsive protein, putative, expressed -
18 Sobic.004G333000 hypothetical protein -
19 Sobic.003G228700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
20 Sobic.002G101400 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -


Gene co-expression network
sample Sobic004G009400 Sobic004G009400 Sobic005G063400 Sobic005G063400 Sobic004G009400--Sobic005G063400 Sobic003G053600 Sobic003G053600 Sobic004G009400--Sobic003G053600 Sobic002G053700 Sobic002G053700 Sobic004G009400--Sobic002G053700 Sobic007G057400 Sobic007G057400 Sobic004G009400--Sobic007G057400 Sobic006G277700 Sobic006G277700 Sobic004G009400--Sobic006G277700 Sobic007G015200 Sobic007G015200 Sobic004G009400--Sobic007G015200 Sobic003G322100 Sobic003G322100 Sobic004G009400--Sobic003G322100 Sobic005G066432 Sobic005G066432 Sobic004G009400--Sobic005G066432 Sobic001G360500 Sobic001G360500 Sobic004G009400--Sobic001G360500 Sobic005G063400--Sobic003G053600 Sobic005G063400--Sobic002G053700 Sobic005G063400--Sobic004G009400 Sobic005G063400--Sobic007G057400 Sobic006G122800 Sobic006G122800 Sobic005G063400--Sobic006G122800 Sobic002G101400 Sobic002G101400 Sobic005G063400--Sobic002G101400 Sobic005G063400--Sobic006G277700 Sobic009G088500 Sobic009G088500 Sobic005G063400--Sobic009G088500 Sobic006G174300 Sobic006G174300 Sobic005G063400--Sobic006G174300 Sobic003G353200 Sobic003G353200 Sobic003G053600--Sobic003G353200 Sobic003G053600--Sobic005G063400 Sobic003G053600--Sobic006G174300 Sobic010G031700 Sobic010G031700 Sobic003G053600--Sobic010G031700 Sobic003G053600--Sobic006G277700 Sobic002G146000 Sobic002G146000 Sobic003G053600--Sobic002G146000 Sobic003G053600--Sobic007G057400 Sobic005G206000 Sobic005G206000 Sobic003G053600--Sobic005G206000 Sobic008G164450 Sobic008G164450 Sobic003G053600--Sobic008G164450 Sobic002G053700--Sobic006G277700 Sobic002G053700--Sobic005G063400 Sobic002G053700--Sobic003G053600 Sobic001G379400 Sobic001G379400 Sobic002G053700--Sobic001G379400 Sobic002G053700--Sobic006G122800 Sobic001G301300 Sobic001G301300 Sobic002G053700--Sobic001G301300 Sobic002G053700--Sobic006G174300 Sobic002G050300 Sobic002G050300 Sobic002G053700--Sobic002G050300 Sobic002G053700--Sobic004G009400 Sobic007G057400--Sobic001G360500 Sobic010G113100 Sobic010G113100 Sobic007G057400--Sobic010G113100 Sobic007G057400--Sobic003G053600 Sobic007G057400--Sobic009G088500 Sobic007G057400--Sobic002G101400 Sobic007G057400--Sobic005G063400 Sobic006G003600 Sobic006G003600 Sobic007G057400--Sobic006G003600 Sobic006G092700 Sobic006G092700 Sobic007G057400--Sobic006G092700 Sobic007G057400--Sobic008G164450 Sobic006G277700--Sobic006G174300 Sobic006G277700--Sobic002G053700 Sobic006G277700--Sobic001G379400 Sobic006G277700--Sobic003G053600 Sobic003G337600 Sobic003G337600 Sobic006G277700--Sobic003G337600 Sobic006G277700--Sobic010G031700 Sobic002G377600 Sobic002G377600 Sobic006G277700--Sobic002G377600 Sobic003G020200 Sobic003G020200 Sobic006G277700--Sobic003G020200 Sobic010G147200 Sobic010G147200 Sobic006G277700--Sobic010G147200 Sobic007G170300 Sobic007G170300 Sobic007G015200--Sobic007G170300 Sobic007G015200--Sobic004G009400 Sobic007G073000 Sobic007G073000 Sobic007G015200--Sobic007G073000 Sobic007G015200--Sobic002G101400 Sobic002G195600 Sobic002G195600 Sobic007G015200--Sobic002G195600 Sobic007G015200--Sobic003G053600 Sobic007G015200--Sobic001G360500 Sobic003G203600 Sobic003G203600 Sobic007G015200--Sobic003G203600 Sobic003G228700 Sobic003G228700 Sobic007G015200--Sobic003G228700 Sobic003G322100--Sobic007G073000 Sobic010G152400 Sobic010G152400 Sobic003G322100--Sobic010G152400 Sobic010G082000 Sobic010G082000 Sobic003G322100--Sobic010G082000 Sobic005G177400 Sobic005G177400 Sobic003G322100--Sobic005G177400 Sobic003G322100--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic003G322100--Sobic006G135300 Sobic003G240400 Sobic003G240400 Sobic003G322100--Sobic003G240400 Sobic003G215300 Sobic003G215300 Sobic003G322100--Sobic003G215300 Sobic004G322000 Sobic004G322000 Sobic003G322100--Sobic004G322000 Sobic005G065900 Sobic005G065900 Sobic005G066432--Sobic005G065900 Sobic010G148800 Sobic010G148800 Sobic005G066432--Sobic010G148800 Sobic005G066100 Sobic005G066100 Sobic005G066432--Sobic005G066100 Sobic006G079300 Sobic006G079300 Sobic005G066432--Sobic006G079300 Sobic005G066432--Sobic006G277700 Sobic005G066432--Sobic003G020200 Sobic005G066432--Sobic004G009400 Sobic005G160700 Sobic005G160700 Sobic005G066432--Sobic005G160700 Sobic004G322800 Sobic004G322800 Sobic005G066432--Sobic004G322800 Sobic007G090472 Sobic007G090472 Sobic001G360500--Sobic007G090472 Sobic001G360500--Sobic010G082000 Sobic001G360500--Sobic007G073000 Sobic001G360500--Sobic002G101400 Sobic001G360500--Sobic007G057400 Sobic001G360500--Sobic006G092700 Sobic006G229100 Sobic006G229100 Sobic001G360500--Sobic006G229100 Sobic001G360500--Sobic006G003600 Sobic001G360500--Sobic003G322100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.