Gene annotation
Transcriptome id Sobic.004G085800.2,Sobic.004G085800.1
Synonym MC9, Sb04g007090, AtMC9
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
ICE-like protease p20 domain containing protein, putative, expressed
UniProt A0A1Z5RLP4 , A0A194YNF2
Pfam PF00656
Panther DB PTHR31810 PTHR31810:SF2
NCBI CDD KOG1546; Metacaspase involved in regulation of apoptosis
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G04200 : metacaspase 9
RAP-DB (Rice) LOC_Os11g04010.1 : ICE-like protease p20 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033394
Brachypodium KQK05598
Barley HORVU5Hr1G044610.1 , HORVU5Hr1G044610.4 , HORVU5Hr1G044610.2 , HORVU5Hr1G044610.3
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G085800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G139900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
2 Sobic.010G010600 - -
3 Sobic.001G297300 - -
4 Sobic.007G209700 - -
5 Sobic.001G401975 - -
6 Sobic.007G123000 sex determination protein tasselseed-2, putative, expressed -
7 Sobic.001G059800 cupin domain containing protein, expressed -
8 Sobic.004G256400 glycosyltransferase, putative, expressed -
9 Sobic.002G088000 cytokinin-N-glucosyltransferase 1, putative, expressed -
10 Sobic.008G176600 expressed protein -
11 Sobic.004G085100 mitochondrial carrier protein, putative, expressed -
12 Sobic.007G172100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@vignain precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
13 Sobic.003G355700 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
14 Sobic.001G362900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed -
15 Sobic.010G216800 expressed protein -
16 Sobic.009G071600 no apical meristem protein, putative, expressed -
17 Sobic.009G168300 expressed protein -
18 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
19 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
20 Sobic.003G063900 - -


Gene co-expression network
sample Sobic004G085800 Sobic004G085800 Sobic002G139900 Sobic002G139900 Sobic004G085800--Sobic002G139900 Sobic010G010600 Sobic010G010600 Sobic004G085800--Sobic010G010600 Sobic001G297300 Sobic001G297300 Sobic004G085800--Sobic001G297300 Sobic007G209700 Sobic007G209700 Sobic004G085800--Sobic007G209700 Sobic001G401975 Sobic001G401975 Sobic004G085800--Sobic001G401975 Sobic007G123000 Sobic007G123000 Sobic004G085800--Sobic007G123000 Sobic001G059800 Sobic001G059800 Sobic004G085800--Sobic001G059800 Sobic004G256400 Sobic004G256400 Sobic004G085800--Sobic004G256400 Sobic002G088000 Sobic002G088000 Sobic004G085800--Sobic002G088000 Sobic003G355700 Sobic003G355700 Sobic002G139900--Sobic003G355700 Sobic002G139900--Sobic010G010600 Sobic002G139900--Sobic001G297300 Sobic002G139900--Sobic007G209700 Sobic002G139900--Sobic007G123000 Sobic002G139900--Sobic001G059800 Sobic010G216800 Sobic010G216800 Sobic002G139900--Sobic010G216800 Sobic003G307600 Sobic003G307600 Sobic002G139900--Sobic003G307600 Sobic002G408700 Sobic002G408700 Sobic002G139900--Sobic002G408700 Sobic010G010600--Sobic010G216800 Sobic010G010600--Sobic007G123000 Sobic010G010600--Sobic001G297300 Sobic010G209300 Sobic010G209300 Sobic010G010600--Sobic010G209300 Sobic010G010600--Sobic002G088000 Sobic006G271400 Sobic006G271400 Sobic010G010600--Sobic006G271400 Sobic006G279000 Sobic006G279000 Sobic010G010600--Sobic006G279000 Sobic008G001700 Sobic008G001700 Sobic010G010600--Sobic008G001700 Sobic010G010600--Sobic001G059800 Sobic001G297300--Sobic001G059800 Sobic002G059100 Sobic002G059100 Sobic001G297300--Sobic002G059100 Sobic001G297300--Sobic010G010600 Sobic001G297300--Sobic007G209700 Sobic001G297300--Sobic007G123000 Sobic002G211501 Sobic002G211501 Sobic001G297300--Sobic002G211501 Sobic001G297300--Sobic010G216800 Sobic001G297300--Sobic006G279000 Sobic001G234000 Sobic001G234000 Sobic001G297300--Sobic001G234000 Sobic007G209700--Sobic003G307600 Sobic002G234100 Sobic002G234100 Sobic007G209700--Sobic002G234100 Sobic009G051201 Sobic009G051201 Sobic007G209700--Sobic009G051201 Sobic007G209700--Sobic007G123000 Sobic010G181900 Sobic010G181900 Sobic007G209700--Sobic010G181900 Sobic002G101200 Sobic002G101200 Sobic007G209700--Sobic002G101200 Sobic002G217000 Sobic002G217000 Sobic007G209700--Sobic002G217000 Sobic007G209700--Sobic001G297300 Sobic005G089101 Sobic005G089101 Sobic007G209700--Sobic005G089101 Sobic010G020100 Sobic010G020100 Sobic001G401975--Sobic010G020100 Sobic002G058900 Sobic002G058900 Sobic001G401975--Sobic002G058900 Sobic005G171800 Sobic005G171800 Sobic001G401975--Sobic005G171800 Sobic007G037200 Sobic007G037200 Sobic001G401975--Sobic007G037200 Sobic001G401975--Sobic002G101200 Sobic008G031400 Sobic008G031400 Sobic001G401975--Sobic008G031400 Sobic001G401975--Sobic002G217000 Sobic005G032500 Sobic005G032500 Sobic001G401975--Sobic005G032500 Sobic008G159300 Sobic008G159300 Sobic001G401975--Sobic008G159300 Sobic007G147300 Sobic007G147300 Sobic007G123000--Sobic007G147300 Sobic007G122932 Sobic007G122932 Sobic007G123000--Sobic007G122932 Sobic009G021300 Sobic009G021300 Sobic007G123000--Sobic009G021300 Sobic007G123000--Sobic008G001700 Sobic005G001500 Sobic005G001500 Sobic007G123000--Sobic005G001500 Sobic007G123000--Sobic002G408700 Sobic007G123000--Sobic010G209300 Sobic008G071900 Sobic008G071900 Sobic007G123000--Sobic008G071900 Sobic009G086800 Sobic009G086800 Sobic007G123000--Sobic009G086800 Sobic001G059800--Sobic001G297300 Sobic001G059800--Sobic002G059100 Sobic001G059800--Sobic002G211501 Sobic001G059800--Sobic010G216800 Sobic001G059800--Sobic010G010600 Sobic010G274300 Sobic010G274300 Sobic001G059800--Sobic010G274300 Sobic001G059800--Sobic001G234000 Sobic001G059800--Sobic007G123000 Sobic001G059800--Sobic007G209700 Sobic004G261000 Sobic004G261000 Sobic004G256400--Sobic004G261000 Sobic001G158600 Sobic001G158600 Sobic004G256400--Sobic001G158600 Sobic005G193700 Sobic005G193700 Sobic004G256400--Sobic005G193700 Sobic006G051750 Sobic006G051750 Sobic004G256400--Sobic006G051750 Sobic007G034900 Sobic007G034900 Sobic004G256400--Sobic007G034900 Sobic005G153200 Sobic005G153200 Sobic004G256400--Sobic005G153200 Sobic001G259250 Sobic001G259250 Sobic004G256400--Sobic001G259250 Sobic004G142000 Sobic004G142000 Sobic004G256400--Sobic004G142000 Sobic001G253400 Sobic001G253400 Sobic004G256400--Sobic001G253400 Sobic004G085100 Sobic004G085100 Sobic002G088000--Sobic004G085100 Sobic001G362900 Sobic001G362900 Sobic002G088000--Sobic001G362900 Sobic004G116200 Sobic004G116200 Sobic002G088000--Sobic004G116200 Sobic005G188000 Sobic005G188000 Sobic002G088000--Sobic005G188000 Sobic004G171500 Sobic004G171500 Sobic002G088000--Sobic004G171500 Sobic002G088000--Sobic008G001700 Sobic003G350900 Sobic003G350900 Sobic002G088000--Sobic003G350900 Sobic002G417900 Sobic002G417900 Sobic002G088000--Sobic002G417900 Sobic003G156100 Sobic003G156100 Sobic002G088000--Sobic003G156100
Octagon: transcription factors


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