Gene annotation
Transcriptome id Sobic.004G178700.1
Synonym
Functional annotation protein transport protein Sec61, putative, expressed
UniProt A0A194YQF5
Pfam PF00344
Panther DB PTHR10906 PTHR10906:SF1
NCBI CDD KOG1373; Transport protein Sec61, alpha subunit
KEGG Orthology K10956; protein transport protein SEC61 subunit alpha
Gene Ontology GO:0016020; membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT1G29310 : SecY protein transport family protein
RAP-DB (Rice) LOC_Os09g33720.1 : protein transport protein Sec61, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G102300 - -
2 Sobic.004G140400 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
3 Sobic.003G392275 - -
4 Sobic.010G006800 auxin-induced protein 5NG4, putative, expressed -
5 Sobic.010G134700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@peptidyl-prolyl isomerase, putative, expressed K09571: FK506-binding protein 4/5
6 Sobic.001G270700 nodulin, putative, expressed -
7 Sobic.003G238250 - -
8 Sobic.005G171700 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
9 Sobic.004G098800 - -
10 Sobic.001G490950 - -
11 Sobic.004G074900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
12 Sobic.007G101600 - -
13 Sobic.008G155400 ankyrin, putative, expressed -
14 Sobic.001G226900 zinc finger family protein, putative, expressed -
15 Sobic.008G141600 expressed protein -
16 Sobic.008G057600 WD-40 repeat family protein, putative, expressed -
17 Sobic.005G185500 - -
18 Sobic.001G286900 - -
19 Sobic.003G141600 - -
20 Sobic.002G368100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@COBRA, putative, expressed -


Gene co-expression network
sample Sobic004G178700 Sobic004G178700 Sobic002G102300 Sobic002G102300 Sobic004G178700--Sobic002G102300 Sobic004G140400 Sobic004G140400 Sobic004G178700--Sobic004G140400 Sobic003G392275 Sobic003G392275 Sobic004G178700--Sobic003G392275 Sobic010G006800 Sobic010G006800 Sobic004G178700--Sobic010G006800 Sobic010G134700 Sobic010G134700 Sobic004G178700--Sobic010G134700 Sobic001G270700 Sobic001G270700 Sobic004G178700--Sobic001G270700 Sobic003G238250 Sobic003G238250 Sobic004G178700--Sobic003G238250 Sobic005G171700 Sobic005G171700 Sobic004G178700--Sobic005G171700 Sobic004G098800 Sobic004G098800 Sobic004G178700--Sobic004G098800 Sobic002G102300--Sobic010G006800 Sobic007G101600 Sobic007G101600 Sobic002G102300--Sobic007G101600 Sobic002G102300--Sobic003G238250 Sobic001G490950 Sobic001G490950 Sobic002G102300--Sobic001G490950 Sobic004G074900 Sobic004G074900 Sobic002G102300--Sobic004G074900 Sobic002G102300--Sobic003G392275 Sobic002G102300--Sobic004G140400 Sobic001G286900 Sobic001G286900 Sobic002G102300--Sobic001G286900 Sobic007G138000 Sobic007G138000 Sobic002G102300--Sobic007G138000 Sobic004G140400--Sobic002G102300 Sobic005G225500 Sobic005G225500 Sobic004G140400--Sobic005G225500 Sobic004G140400--Sobic007G101600 Sobic008G159701 Sobic008G159701 Sobic004G140400--Sobic008G159701 Sobic002G304801 Sobic002G304801 Sobic004G140400--Sobic002G304801 Sobic010G202200 Sobic010G202200 Sobic004G140400--Sobic010G202200 Sobic004G140400--Sobic001G286900 Sobic004G140400--Sobic003G238250 Sobic002G257001 Sobic002G257001 Sobic004G140400--Sobic002G257001 Sobic003G392275--Sobic002G102300 Sobic001G226900 Sobic001G226900 Sobic003G392275--Sobic001G226900 Sobic003G392275--Sobic001G490950 Sobic003G392275--Sobic010G006800 Sobic003G392275--Sobic007G101600 Sobic003G392275--Sobic004G074900 Sobic003G392275--Sobic003G238250 Sobic003G392275--Sobic004G098800 Sobic008G057600 Sobic008G057600 Sobic003G392275--Sobic008G057600 Sobic010G006800--Sobic003G238250 Sobic010G006800--Sobic007G101600 Sobic010G006800--Sobic002G102300 Sobic010G006800--Sobic001G490950 Sobic010G006800--Sobic004G074900 Sobic010G006800--Sobic007G138000 Sobic010G006800--Sobic001G286900 Sobic010G006800--Sobic008G057600 Sobic010G006800--Sobic003G392275 Sobic010G134700--Sobic004G098800 Sobic003G385000 Sobic003G385000 Sobic010G134700--Sobic003G385000 Sobic002G368100 Sobic002G368100 Sobic010G134700--Sobic002G368100 Sobic010G134700--Sobic010G006800 Sobic008G141600 Sobic008G141600 Sobic010G134700--Sobic008G141600 Sobic010G134700--Sobic004G074900 Sobic010G134700--Sobic003G238250 Sobic010G134700--Sobic003G392275 Sobic010G134700--Sobic004G178700 Sobic001G270700--Sobic004G140400 Sobic008G155500 Sobic008G155500 Sobic001G270700--Sobic008G155500 Sobic001G270700--Sobic002G304801 Sobic008G056800 Sobic008G056800 Sobic001G270700--Sobic008G056800 Sobic001G270700--Sobic008G057600 Sobic001G270700--Sobic010G202200 Sobic001G270700--Sobic001G226900 Sobic010G024400 Sobic010G024400 Sobic001G270700--Sobic010G024400 Sobic001G270700--Sobic002G102300 Sobic003G238250--Sobic007G101600 Sobic003G238250--Sobic010G006800 Sobic003G238250--Sobic001G286900 Sobic003G238250--Sobic002G102300 Sobic003G238250--Sobic004G074900 Sobic003G238250--Sobic007G138000 Sobic003G238250--Sobic002G257001 Sobic005G135100 Sobic005G135100 Sobic003G238250--Sobic005G135100 Sobic003G238250--Sobic005G225500 Sobic008G155400 Sobic008G155400 Sobic005G171700--Sobic008G155400 Sobic005G171700--Sobic004G140400 Sobic005G171700--Sobic004G178700 Sobic005G171700--Sobic001G270700 Sobic005G171700--Sobic001G490950 Sobic005G171700--Sobic002G102300 Sobic005G171700--Sobic003G392275 Sobic005G171700--Sobic001G226900 Sobic005G171700--Sobic008G056800 Sobic004G098800--Sobic010G134700 Sobic008G041450 Sobic008G041450 Sobic004G098800--Sobic008G041450 Sobic004G098800--Sobic003G392275 Sobic004G098800--Sobic003G385000 Sobic004G098800--Sobic010G006800 Sobic003G141600 Sobic003G141600 Sobic004G098800--Sobic003G141600 Sobic004G098800--Sobic001G490950 Sobic004G098800--Sobic002G102300 Sobic004G032600 Sobic004G032600 Sobic004G098800--Sobic004G032600
Octagon: transcription factors


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