Gene annotation
Transcriptome id Sobic.004G206500.1
Synonym Sb04g025205
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A194YQS0
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF490
NCBI CDD KOG0130; RNA-binding protein RBM8/Tsunagi (RRM superfamily)
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G41060 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g39060.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G366600 OsFBX51 - F-box domain containing protein, expressed -
2 Sobic.003G330650 - -
3 Sobic.002G212100 - -
4 Sobic.006G076100 - -
5 Sobic.003G369600 CorA-like magnesium transporter protein, putative, expressed -
6 Sobic.007G045900 integral membrane protein DUF6 domain containing protein, expressed -
7 Sobic.010G111450 - -
8 Sobic.009G260800 - -
9 Sobic.004G248700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.002G040201 - -
11 Sobic.010G011900 expressed protein -
12 Sobic.005G134700 chalcone and stilbene synthases, putative, expressed -
13 Sobic.007G143800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.010G110100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"A transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659933)@transcription factor, putative, expressed K14431: transcription factor TGA
15 Sobic.003G013950 - -
16 Sobic.001G366300 telomerase reverse transcriptase, putative, expressed K11126: TERT, telomerase reverse transcriptase
17 Sobic.003G215600 pleiotropic drug resistance protein, putative, expressed -
18 Sobic.002G405700 expressed protein -
19 Sobic.009G121150 - -
20 Sobic.002G239900 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase


Gene co-expression network
sample Sobic004G206500 Sobic004G206500 Sobic001G366600 Sobic001G366600 Sobic004G206500--Sobic001G366600 Sobic003G330650 Sobic003G330650 Sobic004G206500--Sobic003G330650 Sobic002G212100 Sobic002G212100 Sobic004G206500--Sobic002G212100 Sobic006G076100 Sobic006G076100 Sobic004G206500--Sobic006G076100 Sobic003G369600 Sobic003G369600 Sobic004G206500--Sobic003G369600 Sobic007G045900 Sobic007G045900 Sobic004G206500--Sobic007G045900 Sobic010G111450 Sobic010G111450 Sobic004G206500--Sobic010G111450 Sobic009G260800 Sobic009G260800 Sobic004G206500--Sobic009G260800 Sobic004G248700 Sobic004G248700 Sobic004G206500--Sobic004G248700 Sobic001G499800 Sobic001G499800 Sobic001G366600--Sobic001G499800 Sobic005G165850 Sobic005G165850 Sobic001G366600--Sobic005G165850 Sobic010G082400 Sobic010G082400 Sobic001G366600--Sobic010G082400 Sobic001G366600--Sobic006G076100 Sobic001G366300 Sobic001G366300 Sobic001G366600--Sobic001G366300 Sobic002G055800 Sobic002G055800 Sobic001G366600--Sobic002G055800 Sobic007G076600 Sobic007G076600 Sobic001G366600--Sobic007G076600 Sobic001G320000 Sobic001G320000 Sobic001G366600--Sobic001G320000 Sobic001G366600--Sobic010G111450 Sobic003G330650--Sobic004G206500 Sobic003G330650--Sobic001G366600 Sobic001G531100 Sobic001G531100 Sobic003G330650--Sobic001G531100 Sobic004G195650 Sobic004G195650 Sobic003G330650--Sobic004G195650 Sobic001G405200 Sobic001G405200 Sobic003G330650--Sobic001G405200 Sobic003G330650--Sobic009G260800 Sobic002G054100 Sobic002G054100 Sobic003G330650--Sobic002G054100 Sobic003G330650--Sobic006G076100 Sobic001G170301 Sobic001G170301 Sobic003G330650--Sobic001G170301 Sobic006G155300 Sobic006G155300 Sobic002G212100--Sobic006G155300 Sobic001G469300 Sobic001G469300 Sobic002G212100--Sobic001G469300 Sobic002G212100--Sobic006G076100 Sobic007G197500 Sobic007G197500 Sobic002G212100--Sobic007G197500 Sobic004G322500 Sobic004G322500 Sobic002G212100--Sobic004G322500 Sobic002G327600 Sobic002G327600 Sobic002G212100--Sobic002G327600 Sobic006G210500 Sobic006G210500 Sobic002G212100--Sobic006G210500 Sobic003G215600 Sobic003G215600 Sobic002G212100--Sobic003G215600 Sobic003G025400 Sobic003G025400 Sobic002G212100--Sobic003G025400 Sobic006G076100--Sobic010G111450 Sobic002G040201 Sobic002G040201 Sobic006G076100--Sobic002G040201 Sobic003G013950 Sobic003G013950 Sobic006G076100--Sobic003G013950 Sobic002G251050 Sobic002G251050 Sobic006G076100--Sobic002G251050 Sobic001G463600 Sobic001G463600 Sobic006G076100--Sobic001G463600 Sobic002G394466 Sobic002G394466 Sobic006G076100--Sobic002G394466 Sobic004G138600 Sobic004G138600 Sobic006G076100--Sobic004G138600 Sobic003G407950 Sobic003G407950 Sobic006G076100--Sobic003G407950 Sobic009G187150 Sobic009G187150 Sobic006G076100--Sobic009G187150 Sobic010G222900 Sobic010G222900 Sobic003G369600--Sobic010G222900 Sobic003G435400 Sobic003G435400 Sobic003G369600--Sobic003G435400 Sobic004G040800 Sobic004G040800 Sobic003G369600--Sobic004G040800 Sobic005G092301 Sobic005G092301 Sobic003G369600--Sobic005G092301 Sobic010G011900 Sobic010G011900 Sobic003G369600--Sobic010G011900 Sobic006G081700 Sobic006G081700 Sobic003G369600--Sobic006G081700 Sobic006G199700 Sobic006G199700 Sobic003G369600--Sobic006G199700 Sobic010G211200 Sobic010G211200 Sobic003G369600--Sobic010G211200 Sobic003G075400 Sobic003G075400 Sobic003G369600--Sobic003G075400 Sobic004G066500 Sobic004G066500 Sobic007G045900--Sobic004G066500 Sobic003G399500 Sobic003G399500 Sobic007G045900--Sobic003G399500 Sobic004G281700 Sobic004G281700 Sobic007G045900--Sobic004G281700 Sobic001G418500 Sobic001G418500 Sobic007G045900--Sobic001G418500 Sobic003G236200 Sobic003G236200 Sobic007G045900--Sobic003G236200 Sobic010G142900 Sobic010G142900 Sobic007G045900--Sobic010G142900 Sobic003G295600 Sobic003G295600 Sobic007G045900--Sobic003G295600 Sobic004G301800 Sobic004G301800 Sobic007G045900--Sobic004G301800 Sobic007G168100 Sobic007G168100 Sobic007G045900--Sobic007G168100 Sobic010G111450--Sobic002G040201 Sobic010G111450--Sobic003G013950 Sobic010G111450--Sobic006G076100 Sobic010G111450--Sobic002G394466 Sobic010G111450--Sobic001G463600 Sobic010G111450--Sobic002G251050 Sobic010G111450--Sobic001G366300 Sobic010G111450--Sobic004G138600 Sobic003G243900 Sobic003G243900 Sobic010G111450--Sobic003G243900 Sobic001G216900 Sobic001G216900 Sobic009G260800--Sobic001G216900 Sobic005G039350 Sobic005G039350 Sobic009G260800--Sobic005G039350 Sobic006G055100 Sobic006G055100 Sobic009G260800--Sobic006G055100 Sobic008G052450 Sobic008G052450 Sobic009G260800--Sobic008G052450 Sobic005G149000 Sobic005G149000 Sobic009G260800--Sobic005G149000 Sobic003G429500 Sobic003G429500 Sobic009G260800--Sobic003G429500 Sobic008G145400 Sobic008G145400 Sobic009G260800--Sobic008G145400 Sobic010G104200 Sobic010G104200 Sobic009G260800--Sobic010G104200 Sobic009G159500 Sobic009G159500 Sobic009G260800--Sobic009G159500 Sobic004G116500 Sobic004G116500 Sobic004G248700--Sobic004G116500 Sobic009G155900 Sobic009G155900 Sobic004G248700--Sobic009G155900 Sobic003G434300 Sobic003G434300 Sobic004G248700--Sobic003G434300 Sobic004G057700 Sobic004G057700 Sobic004G248700--Sobic004G057700 Sobic005G138000 Sobic005G138000 Sobic004G248700--Sobic005G138000 Sobic004G244200 Sobic004G244200 Sobic004G248700--Sobic004G244200 Sobic007G143800 Sobic007G143800 Sobic004G248700--Sobic007G143800 Sobic005G120600 Sobic005G120600 Sobic004G248700--Sobic005G120600 Sobic009G000600 Sobic009G000600 Sobic004G248700--Sobic009G000600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.