Gene annotation
Transcriptome id Sobic.004G250000.2,Sobic.004G250000.3,Sobic.004G250000.5,Sobic.004G250000.4
Synonym AGL16
Functional annotation OsMADS57 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A1Z5RNZ6 , A0A1Z5RNX5 , A0A1Z5RNX8 , A0A194YSL3
Pfam PF00319 PF01486 PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF144
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G57230 : AGAMOUS-like 16
RAP-DB (Rice) LOC_Os02g49840.1,LOC_Os02g49840.4 : OsMADS57 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a021916 , Zm00025a011114
Brachypodium KQJ82998 , PNT69524 , PNT69525 , PNT69526 , PNT69527 , PNT69523 , PNT69528 , PNT69529
Barley HORVU2Hr1G080490.9 , HORVU2Hr1G080490.8 , HORVU2Hr1G080490.1 , HORVU2Hr1G080490.7 , HORVU2Hr1G080490.6 , HORVU2Hr1G080490.5 , HORVU2Hr1G080490.4 , HORVU6Hr1G073040.18 , HORVU6Hr1G073040.10 , HORVU6Hr1G073040.11 , HORVU6Hr1G073040.13 , HORVU6Hr1G073040.12 , HORVU6Hr1G073040.14 , HORVU6Hr1G073040.15 , HORVU6Hr1G073040.16 , HORVU6Hr1G073040.17 , HORVU6Hr1G073040.8 , HORVU6Hr1G073040.9 , HORVU6Hr1G073040.2 , HORVU6Hr1G073040.3 , HORVU6Hr1G073040.1 , HORVU6Hr1G073040.6 , HORVU6Hr1G073040.7 , HORVU6Hr1G073040.4 , HORVU6Hr1G073040.5 , HORVU2Hr1G080490.10
Wheat TraesCS2A02G337900 , TraesCS6A02G292300 , TraesCS6A02G292300 , TraesCS2B02G344000 , TraesCS2D02G325000 , TraesCS6D02G273500 , TraesCS6D02G273500 , TraesCS6B02G322700 , TraesCS6B02G322700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G148400 - -
2 Sobic.004G249950 - -
3 Sobic.009G158150 - -
4 Sobic.006G053601 - -
5 Sobic.004G252300 CCT/B-box zinc finger protein, putative, expressed -
6 Sobic.010G166201 - -
7 Sobic.010G098800 NADH-ubiquinone oxidoreductase chain 6, putative, expressed K03884: NADH-ubiquinone oxidoreductase chain 6
8 Sobic.007G042700 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA treatment"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
9 Sobic.002G073000 - -
10 Sobic.007G045750 - -
11 Sobic.002G312550 - -
12 Sobic.004G223700 - -
13 Sobic.004G206000 - -
14 Sobic.001G081450 - -
15 Sobic.003G129700 - -
16 Sobic.009G215100 jacalin-like lectin domain containing protein, expressed -
17 Sobic.006G097600 - -
18 Sobic.001G497400 - -
19 Sobic.007G116150 - -
20 Sobic.001G516400 - -


Gene co-expression network
sample Sobic004G250000 Sobic004G250000 Sobic009G148400 Sobic009G148400 Sobic004G250000--Sobic009G148400 Sobic004G249950 Sobic004G249950 Sobic004G250000--Sobic004G249950 Sobic009G158150 Sobic009G158150 Sobic004G250000--Sobic009G158150 Sobic006G053601 Sobic006G053601 Sobic004G250000--Sobic006G053601 Sobic004G252300 Sobic004G252300 Sobic004G250000--Sobic004G252300 Sobic010G166201 Sobic010G166201 Sobic004G250000--Sobic010G166201 Sobic010G098800 Sobic010G098800 Sobic004G250000--Sobic010G098800 Sobic007G042700 Sobic007G042700 Sobic004G250000--Sobic007G042700 Sobic002G073000 Sobic002G073000 Sobic004G250000--Sobic002G073000 Sobic004G206000 Sobic004G206000 Sobic009G148400--Sobic004G206000 Sobic009G148400--Sobic004G249950 Sobic009G148400--Sobic010G098800 Sobic001G081450 Sobic001G081450 Sobic009G148400--Sobic001G081450 Sobic004G223700 Sobic004G223700 Sobic009G148400--Sobic004G223700 SobicK032600 SobicK032600 Sobic009G148400--SobicK032600 Sobic007G116150 Sobic007G116150 Sobic009G148400--Sobic007G116150 Sobic007G134300 Sobic007G134300 Sobic009G148400--Sobic007G134300 SobicK032400 SobicK032400 Sobic009G148400--SobicK032400 Sobic004G249950--Sobic009G148400 Sobic004G249950--Sobic010G098800 Sobic004G249950--Sobic001G081450 Sobic004G249950--Sobic004G223700 Sobic004G249950--Sobic004G206000 Sobic007G045750 Sobic007G045750 Sobic004G249950--Sobic007G045750 Sobic004G249950--Sobic002G073000 Sobic010G219200 Sobic010G219200 Sobic004G249950--Sobic010G219200 Sobic004G249950--Sobic009G158150 Sobic003G129700 Sobic003G129700 Sobic009G158150--Sobic003G129700 Sobic009G158150--Sobic007G045750 Sobic001G163500 Sobic001G163500 Sobic009G158150--Sobic001G163500 Sobic002G062400 Sobic002G062400 Sobic009G158150--Sobic002G062400 Sobic009G158150--Sobic010G166201 Sobic001G516400 Sobic001G516400 Sobic009G158150--Sobic001G516400 Sobic009G158150--Sobic004G249950 Sobic005G168900 Sobic005G168900 Sobic009G158150--Sobic005G168900 Sobic001G050650 Sobic001G050650 Sobic009G158150--Sobic001G050650 Sobic006G053601--Sobic002G073000 Sobic006G053601--Sobic010G098800 Sobic006G053601--Sobic004G223700 Sobic006G053601--Sobic010G166201 Sobic006G053601--Sobic001G050650 Sobic006G053601--Sobic007G045750 Sobic006G053601--Sobic001G081450 Sobic003G173200 Sobic003G173200 Sobic006G053601--Sobic003G173200 Sobic006G053601--Sobic009G148400 Sobic001G497400 Sobic001G497400 Sobic004G252300--Sobic001G497400 Sobic009G077000 Sobic009G077000 Sobic004G252300--Sobic009G077000 Sobic006G053550 Sobic006G053550 Sobic004G252300--Sobic006G053550 Sobic002G214000 Sobic002G214000 Sobic004G252300--Sobic002G214000 Sobic004G310350 Sobic004G310350 Sobic004G252300--Sobic004G310350 Sobic009G215100 Sobic009G215100 Sobic004G252300--Sobic009G215100 SobicK031900 SobicK031900 Sobic004G252300--SobicK031900 Sobic004G252300--Sobic007G042700 Sobic004G252300--Sobic010G219200 Sobic010G166201--Sobic002G073000 Sobic010G166201--Sobic009G158150 Sobic010G259800 Sobic010G259800 Sobic010G166201--Sobic010G259800 Sobic010G166201--Sobic001G050650 Sobic001G443400 Sobic001G443400 Sobic010G166201--Sobic001G443400 Sobic010G166201--Sobic006G053601 Sobic010G166201--Sobic010G098800 Sobic010G166201--Sobic001G516400 Sobic010G166201--Sobic007G045750 Sobic010G098800--Sobic004G223700 Sobic010G098800--Sobic007G116150 Sobic010G098800--Sobic001G081450 Sobic010G098800--Sobic003G173200 Sobic010G098800--Sobic004G206000 Sobic010G098800--SobicK032600 Sobic010G098800--Sobic009G148400 Sobic010G098800--SobicK032400 Sobic003G268100 Sobic003G268100 Sobic010G098800--Sobic003G268100 Sobic007G042700--Sobic001G497400 Sobic002G000350 Sobic002G000350 Sobic007G042700--Sobic002G000350 Sobic001G278900 Sobic001G278900 Sobic007G042700--Sobic001G278900 Sobic003G085533 Sobic003G085533 Sobic007G042700--Sobic003G085533 Sobic007G042700--Sobic004G252300 Sobic004G072300 Sobic004G072300 Sobic007G042700--Sobic004G072300 Sobic001G471050 Sobic001G471050 Sobic007G042700--Sobic001G471050 Sobic007G042700--Sobic004G249950 Sobic006G097600 Sobic006G097600 Sobic007G042700--Sobic006G097600 Sobic002G094000 Sobic002G094000 Sobic002G073000--Sobic002G094000 Sobic002G073000--Sobic010G166201 Sobic005G024500 Sobic005G024500 Sobic002G073000--Sobic005G024500 Sobic002G073000--Sobic010G098800 Sobic002G073000--Sobic003G173200 Sobic002G073000--Sobic004G223700 Sobic002G094100 Sobic002G094100 Sobic002G073000--Sobic002G094100 Sobic004G334501 Sobic004G334501 Sobic002G073000--Sobic004G334501 Sobic002G121050 Sobic002G121050 Sobic002G073000--Sobic002G121050
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.