Gene annotation
Transcriptome id Sobic.004G275400.1
Synonym Sb04g031240
Functional annotation RING-H2 finger protein ATL5G, putative, expressed
UniProt C5Y0R9
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF120
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G17600 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g46600.1 : RING-H2 finger protein ATL5G, putative, expressed
MaizeGDB (Corn) Zm00025a021602 , Zm00025a011169
Brachypodium KQJ84301 , KQK00839
Barley HORVU2Hr1G105980.3 , HORVU2Hr1G105980.2 , HORVU6Hr1G067020.4 , HORVU6Hr1G067020.1 , HORVU6Hr1G067020.3 , HORVU6Hr1G067020.2 , HORVU7Hr1G107430.1 , HORVU6Hr1G077610.2 , HORVU6Hr1G077610.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G275400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -
2 Sobic.009G151700 protein of unknown function DUF502 domain containing protein, expressed -
3 Sobic.007G139500 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
4 Sobic.003G017500 TTL1, putative, expressed -
5 Sobic.001G196000 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
6 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
7 Sobic.001G159800 KIP1, putative, expressed -
8 Sobic.002G161700 Myb-like DNA-binding domain containing protein, putative, expressed -
9 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
10 Sobic.009G206500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
11 Sobic.010G090500 expressed protein -
12 Sobic.009G001200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
13 Sobic.002G393200 CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
14 Sobic.001G408800 hydrolase, alpha/beta fold family protein, putative, expressed -
15 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
16 Sobic.009G026101 - -
17 Sobic.009G125900 expressed protein -
18 Sobic.001G073150 - K15449: tRNA wybutosine-synthesizing protein 1
19 Sobic.009G061000 DNA binding protein, putative, expressed -
20 Sobic.001G437500 plant protein of unknown function DUF869 domain containing protein, expressed -


Gene co-expression network
sample Sobic004G275400 Sobic004G275400 Sobic008G191500 Sobic008G191500 Sobic004G275400--Sobic008G191500 Sobic009G151700 Sobic009G151700 Sobic004G275400--Sobic009G151700 Sobic007G139500 Sobic007G139500 Sobic004G275400--Sobic007G139500 Sobic003G017500 Sobic003G017500 Sobic004G275400--Sobic003G017500 Sobic001G196000 Sobic001G196000 Sobic004G275400--Sobic001G196000 Sobic007G173000 Sobic007G173000 Sobic004G275400--Sobic007G173000 Sobic001G159800 Sobic001G159800 Sobic004G275400--Sobic001G159800 Sobic002G161700 Sobic002G161700 Sobic004G275400--Sobic002G161700 Sobic002G313600 Sobic002G313600 Sobic004G275400--Sobic002G313600 Sobic010G090500 Sobic010G090500 Sobic008G191500--Sobic010G090500 Sobic008G191500--Sobic001G159800 Sobic009G206500 Sobic009G206500 Sobic008G191500--Sobic009G206500 Sobic008G191500--Sobic003G017500 Sobic008G191500--Sobic009G151700 Sobic004G051300 Sobic004G051300 Sobic008G191500--Sobic004G051300 Sobic001G073150 Sobic001G073150 Sobic008G191500--Sobic001G073150 Sobic009G073400 Sobic009G073400 Sobic008G191500--Sobic009G073400 Sobic009G061000 Sobic009G061000 Sobic008G191500--Sobic009G061000 Sobic006G267500 Sobic006G267500 Sobic009G151700--Sobic006G267500 Sobic009G151700--Sobic009G206500 Sobic003G345200 Sobic003G345200 Sobic009G151700--Sobic003G345200 Sobic009G151700--Sobic007G139500 Sobic009G246700 Sobic009G246700 Sobic009G151700--Sobic009G246700 Sobic007G040301 Sobic007G040301 Sobic009G151700--Sobic007G040301 Sobic009G151700--Sobic009G061000 Sobic009G151700--Sobic002G161700 Sobic009G119700 Sobic009G119700 Sobic009G151700--Sobic009G119700 Sobic007G139500--Sobic001G196000 Sobic001G051300 Sobic001G051300 Sobic007G139500--Sobic001G051300 Sobic007G139500--Sobic009G206500 Sobic001G437500 Sobic001G437500 Sobic007G139500--Sobic001G437500 Sobic003G179500 Sobic003G179500 Sobic007G139500--Sobic003G179500 Sobic001G103000 Sobic001G103000 Sobic007G139500--Sobic001G103000 Sobic007G139500--Sobic003G017500 Sobic002G191000 Sobic002G191000 Sobic007G139500--Sobic002G191000 Sobic009G214100 Sobic009G214100 Sobic007G139500--Sobic009G214100 Sobic002G383100 Sobic002G383100 Sobic003G017500--Sobic002G383100 Sobic003G017500--Sobic001G051300 Sobic007G130900 Sobic007G130900 Sobic003G017500--Sobic007G130900 Sobic003G017500--Sobic001G437500 Sobic003G017500--Sobic007G139500 Sobic003G017500--Sobic009G073400 Sobic003G017500--Sobic009G206500 Sobic003G017500--Sobic001G159800 Sobic003G410600 Sobic003G410600 Sobic003G017500--Sobic003G410600 Sobic001G196000--Sobic001G437500 Sobic001G196000--Sobic007G139500 Sobic004G243800 Sobic004G243800 Sobic001G196000--Sobic004G243800 Sobic001G196000--Sobic009G206500 Sobic004G274800 Sobic004G274800 Sobic001G196000--Sobic004G274800 Sobic006G081000 Sobic006G081000 Sobic001G196000--Sobic006G081000 Sobic001G196000--Sobic007G173000 Sobic008G174966 Sobic008G174966 Sobic001G196000--Sobic008G174966 Sobic001G196000--Sobic001G159800 Sobic006G071628 Sobic006G071628 Sobic007G173000--Sobic006G071628 Sobic007G173000--Sobic001G051300 Sobic007G173000--Sobic001G196000 Sobic007G173000--Sobic007G139500 Sobic005G129201 Sobic005G129201 Sobic007G173000--Sobic005G129201 Sobic002G232400 Sobic002G232400 Sobic007G173000--Sobic002G232400 Sobic007G173000--Sobic009G061000 Sobic002G370400 Sobic002G370400 Sobic007G173000--Sobic002G370400 Sobic009G256700 Sobic009G256700 Sobic007G173000--Sobic009G256700 Sobic001G159800--Sobic010G090500 Sobic001G159800--Sobic001G437500 Sobic001G159800--Sobic009G061000 Sobic001G159800--Sobic009G206500 Sobic001G159800--Sobic009G073400 Sobic001G159800--Sobic003G017500 Sobic001G159800--Sobic001G196000 Sobic006G173200 Sobic006G173200 Sobic001G159800--Sobic006G173200 Sobic001G507200 Sobic001G507200 Sobic001G159800--Sobic001G507200 Sobic002G393200 Sobic002G393200 Sobic002G161700--Sobic002G393200 Sobic002G161700--Sobic009G206500 Sobic004G308100 Sobic004G308100 Sobic002G161700--Sobic004G308100 Sobic007G166800 Sobic007G166800 Sobic002G161700--Sobic007G166800 Sobic002G161700--Sobic009G151700 Sobic002G161700--Sobic009G061000 Sobic003G013000 Sobic003G013000 Sobic002G161700--Sobic003G013000 Sobic002G319200 Sobic002G319200 Sobic002G161700--Sobic002G319200 Sobic006G254500 Sobic006G254500 Sobic002G161700--Sobic006G254500 Sobic001G116000 Sobic001G116000 Sobic002G313600--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic002G313600--Sobic007G044400 Sobic001G196100 Sobic001G196100 Sobic002G313600--Sobic001G196100 Sobic003G134800 Sobic003G134800 Sobic002G313600--Sobic003G134800 Sobic001G026600 Sobic001G026600 Sobic002G313600--Sobic001G026600 Sobic001G108400 Sobic001G108400 Sobic002G313600--Sobic001G108400 Sobic001G530800 Sobic001G530800 Sobic002G313600--Sobic001G530800 Sobic001G281900 Sobic001G281900 Sobic002G313600--Sobic001G281900 Sobic002G313600--Sobic003G017500
Octagon: transcription factors


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