Gene annotation
Transcriptome id Sobic.004G299700.1,Sobic.004G299700.2
Synonym YSL3, ATYSL3, Sb04g033340
Functional annotation -
UniProt A0A1Z5RQM6 , A0A194YSE3
Pfam PF03169
Panther DB PTHR31645 PTHR31645:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53550 : YELLOW STRIPE like 3
RAP-DB (Rice) LOC_Os02g43410.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a010614 , Zm00025a020927 , Zm00025a056642 , Zm00025a056537
Brachypodium KQK00558 , PNT61582 , KQJ83865 , PNT61581
Barley HORVU2Hr1G120250.1 , HORVU2Hr1G120250.2 , HORVU2Hr1G092880.8 , HORVU2Hr1G092880.7 , HORVU2Hr1G092880.6 , HORVU2Hr1G092880.4 , HORVU2Hr1G092880.3 , HORVU2Hr1G092880.2 , HORVU2Hr1G090380.5 , HORVU2Hr1G092810.4 , HORVU2Hr1G092810.12 , HORVU2Hr1G092810.13 , HORVU2Hr1G092810.10 , HORVU2Hr1G092810.11 , HORVU2Hr1G092810.16 , HORVU2Hr1G092810.17 , HORVU2Hr1G092810.14 , HORVU2Hr1G092810.15 , HORVU2Hr1G092810.18 , HORVU2Hr1G092810.19 , HORVU2Hr1G092810.7 , HORVU2Hr1G090380.8 , HORVU2Hr1G090380.2 , HORVU2Hr1G090380.3 , HORVU2Hr1G090380.1 , HORVU2Hr1G090380.6 , HORVU2Hr1G090380.7 , HORVU2Hr1G090380.4 , HORVU2Hr1G092810.20 , HORVU2Hr1G092810.2 , HORVU2Hr1G092810.3 , HORVU2Hr1G092810.5 , HORVU2Hr1G092810.8 , HORVU2Hr1G092810.9 , HORVU2Hr1G092810.1 , HORVU2Hr1G092810.6
Wheat TraesCS2A02G391000 , TraesCS2A02G391000 , TraesCS2A02G391000 , TraesCS2D02G387700 , TraesCS2D02G387700 , TraesCS2D02G387700 , TraesCS2A02G390800 , TraesCS2B02G408500 , TraesCS2D02G387600 , TraesCS2D02G387600 , TraesCS2B02G393600 , TraesCS2D02G554800 , TraesCS2D02G387800 , TraesCS2D02G387800 , TraesCS2A02G553300 , TraesCS2A02G376700 , TraesCS2B02G408000 , TraesCS2B02G408000 , TraesCS2B02G585300 , TraesCS2D02G374000 , TraesCS2A02G377600 , TraesCS2A02G377200 , TraesCS2B02G407900 , TraesCS2B02G407900 , TraesCS2A02G391100 , TraesCS2A02G391100 , TraesCS2D02G373100
Populus -


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cDNA sequences
Sobic.004G299700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G090000 OsFBX46 - F-box domain containing protein, expressed -
2 Sobic.010G189700 aspartic proteinase, putative, expressed -
3 Sobic.001G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan phosphorylast isozyme, putative, expressed K00688: PYG, glycogen phosphorylase
4 Sobic.002G086500 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
5 Sobic.009G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
6 Sobic.007G054700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
7 Sobic.010G020100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
8 Sobic.009G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
9 Sobic.005G033600 heavy-metal-associated domain-containing protein, putative, expressed -
10 Sobic.002G064900 FHA domain containing protein, putative, expressed -
11 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
12 Sobic.003G076400 ZOS1-07 - C2H2 zinc finger protein, expressed -
13 Sobic.004G010000 OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed K09645: vitellogenic carboxypeptidase-like protein
14 Sobic.010G010300 - -
15 Sobic.004G085800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ICE-like protease p20 domain containing protein, putative, expressed -
16 Sobic.008G122500 expressed protein -
17 Sobic.006G046300 histidine kinase, putative, expressed -
18 Sobic.002G217000 expressed protein -
19 Sobic.006G004300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.006G031000 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic004G299700 Sobic004G299700 Sobic004G090000 Sobic004G090000 Sobic004G299700--Sobic004G090000 Sobic010G189700 Sobic010G189700 Sobic004G299700--Sobic010G189700 Sobic001G083900 Sobic001G083900 Sobic004G299700--Sobic001G083900 Sobic002G086500 Sobic002G086500 Sobic004G299700--Sobic002G086500 Sobic009G239900 Sobic009G239900 Sobic004G299700--Sobic009G239900 Sobic007G054700 Sobic007G054700 Sobic004G299700--Sobic007G054700 Sobic010G020100 Sobic010G020100 Sobic004G299700--Sobic010G020100 Sobic009G139500 Sobic009G139500 Sobic004G299700--Sobic009G139500 Sobic005G033600 Sobic005G033600 Sobic004G299700--Sobic005G033600 Sobic002G147500 Sobic002G147500 Sobic004G090000--Sobic002G147500 Sobic004G090000--Sobic004G299700 Sobic009G013200 Sobic009G013200 Sobic004G090000--Sobic009G013200 Sobic001G330600 Sobic001G330600 Sobic004G090000--Sobic001G330600 Sobic004G090200 Sobic004G090200 Sobic004G090000--Sobic004G090200 Sobic004G090300 Sobic004G090300 Sobic004G090000--Sobic004G090300 Sobic006G279000 Sobic006G279000 Sobic004G090000--Sobic006G279000 Sobic007G147300 Sobic007G147300 Sobic004G090000--Sobic007G147300 Sobic007G122932 Sobic007G122932 Sobic004G090000--Sobic007G122932 Sobic003G007900 Sobic003G007900 Sobic010G189700--Sobic003G007900 Sobic010G189700--Sobic004G090000 Sobic008G020700 Sobic008G020700 Sobic010G189700--Sobic008G020700 Sobic008G125400 Sobic008G125400 Sobic010G189700--Sobic008G125400 Sobic003G153500 Sobic003G153500 Sobic010G189700--Sobic003G153500 Sobic009G090100 Sobic009G090100 Sobic010G189700--Sobic009G090100 Sobic004G085800 Sobic004G085800 Sobic010G189700--Sobic004G085800 Sobic010G189700--Sobic004G299700 Sobic008G125300 Sobic008G125300 Sobic010G189700--Sobic008G125300 Sobic002G104300 Sobic002G104300 Sobic001G083900--Sobic002G104300 Sobic001G425900 Sobic001G425900 Sobic001G083900--Sobic001G425900 Sobic010G273800 Sobic010G273800 Sobic001G083900--Sobic010G273800 Sobic004G163700 Sobic004G163700 Sobic001G083900--Sobic004G163700 Sobic001G083900--Sobic009G013200 Sobic003G213100 Sobic003G213100 Sobic001G083900--Sobic003G213100 Sobic003G412200 Sobic003G412200 Sobic001G083900--Sobic003G412200 Sobic007G204600 Sobic007G204600 Sobic001G083900--Sobic007G204600 Sobic005G003100 Sobic005G003100 Sobic001G083900--Sobic005G003100 Sobic003G076400 Sobic003G076400 Sobic002G086500--Sobic003G076400 Sobic001G029700 Sobic001G029700 Sobic002G086500--Sobic001G029700 Sobic002G086500--Sobic009G139500 Sobic006G161300 Sobic006G161300 Sobic002G086500--Sobic006G161300 Sobic010G111400 Sobic010G111400 Sobic002G086500--Sobic010G111400 Sobic002G101200 Sobic002G101200 Sobic002G086500--Sobic002G101200 Sobic002G058900 Sobic002G058900 Sobic002G086500--Sobic002G058900 Sobic005G035500 Sobic005G035500 Sobic002G086500--Sobic005G035500 Sobic002G086500--Sobic005G033600 Sobic002G033500 Sobic002G033500 Sobic009G239900--Sobic002G033500 Sobic006G046300 Sobic006G046300 Sobic009G239900--Sobic006G046300 Sobic006G061100 Sobic006G061100 Sobic009G239900--Sobic006G061100 Sobic004G210000 Sobic004G210000 Sobic009G239900--Sobic004G210000 Sobic007G042300 Sobic007G042300 Sobic009G239900--Sobic007G042300 Sobic001G305100 Sobic001G305100 Sobic009G239900--Sobic001G305100 Sobic003G027350 Sobic003G027350 Sobic009G239900--Sobic003G027350 Sobic005G074400 Sobic005G074400 Sobic009G239900--Sobic005G074400 Sobic009G239900--Sobic006G161300 Sobic003G225800 Sobic003G225800 Sobic007G054700--Sobic003G225800 Sobic005G089101 Sobic005G089101 Sobic007G054700--Sobic005G089101 Sobic005G197000 Sobic005G197000 Sobic007G054700--Sobic005G197000 Sobic007G054700--Sobic003G213100 Sobic002G217000 Sobic002G217000 Sobic007G054700--Sobic002G217000 Sobic003G291100 Sobic003G291100 Sobic007G054700--Sobic003G291100 Sobic005G001500 Sobic005G001500 Sobic007G054700--Sobic005G001500 Sobic002G100000 Sobic002G100000 Sobic007G054700--Sobic002G100000 Sobic007G054700--Sobic007G122932 Sobic001G401975 Sobic001G401975 Sobic010G020100--Sobic001G401975 Sobic002G172100 Sobic002G172100 Sobic010G020100--Sobic002G172100 Sobic003G266100 Sobic003G266100 Sobic010G020100--Sobic003G266100 Sobic002G172200 Sobic002G172200 Sobic010G020100--Sobic002G172200 Sobic003G294800 Sobic003G294800 Sobic010G020100--Sobic003G294800 Sobic001G284700 Sobic001G284700 Sobic010G020100--Sobic001G284700 Sobic004G220900 Sobic004G220900 Sobic010G020100--Sobic004G220900 Sobic001G261700 Sobic001G261700 Sobic010G020100--Sobic001G261700 Sobic003G106400 Sobic003G106400 Sobic010G020100--Sobic003G106400 Sobic010G010300 Sobic010G010300 Sobic009G139500--Sobic010G010300 Sobic009G139500--Sobic005G033600 Sobic009G139500--Sobic003G076400 Sobic009G139500--Sobic002G058900 Sobic002G267700 Sobic002G267700 Sobic009G139500--Sobic002G267700 Sobic009G139500--Sobic002G101200 Sobic006G031000 Sobic006G031000 Sobic009G139500--Sobic006G031000 Sobic002G015400 Sobic002G015400 Sobic009G139500--Sobic002G015400 Sobic008G159300 Sobic008G159300 Sobic009G139500--Sobic008G159300 Sobic005G174200 Sobic005G174200 Sobic005G033600--Sobic005G174200 Sobic005G033600--Sobic002G267700 Sobic007G032500 Sobic007G032500 Sobic005G033600--Sobic007G032500 Sobic005G033600--Sobic009G139500 Sobic003G211600 Sobic003G211600 Sobic005G033600--Sobic003G211600 Sobic006G070830 Sobic006G070830 Sobic005G033600--Sobic006G070830 Sobic001G374600 Sobic001G374600 Sobic005G033600--Sobic001G374600 Sobic005G033600--Sobic002G015400 Sobic003G091500 Sobic003G091500 Sobic005G033600--Sobic003G091500
Octagon: transcription factors


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