Gene annotation
Transcriptome id Sobic.005G188200.2
Synonym ATRAD51, RAD51, Sb05g024565
Functional annotation DNA repair protein Rad51, putative, expressed
UniProt A0A1Z5RJA1
Pfam PF14520 PF00154
Panther DB PTHR22942 PTHR22942:SF45
NCBI CDD KOG1434; Meiotic recombination protein Dmc1
KEGG Orthology K04482; DNA repair protein RAD51
Gene Ontology GO:0009432; SOS response GO:0006281DNA repair GO:0005524ATP binding GO:0003697single-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G20850 : RAS associated with diabetes protein 51
RAP-DB (Rice) LOC_Os11g40150.1 : DNA repair protein Rad51, putative, expressed
MaizeGDB (Corn) Zm00025a025611 , Zm00025a048488
Brachypodium KQJ86674 , KQJ87825 , PNT63280
Barley HORVU7Hr1G091450.11 , HORVU7Hr1G091450.8 , HORVU7Hr1G091450.9 , HORVU7Hr1G091450.1 , HORVU7Hr1G091450.2 , HORVU7Hr1G091450.3 , HORVU7Hr1G091450.4 , HORVU7Hr1G091450.5 , HORVU7Hr1G091450.6 , HORVU7Hr1G091450.7 , HORVU7Hr1G091450.12 , HORVU7Hr1G091450.13 , HORVU7Hr1G091450.10 , HORVU7Hr1G091450.16 , HORVU7Hr1G091450.14 , HORVU7Hr1G091450.15
Wheat TraesCS7D02G381300 , TraesCS7A02G384800 , TraesCS7A02G384800 , TraesCS7B02G287700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G121400 expressed protein -
2 Sobic.008G104100 - -
3 Sobic.008G092932 - -
4 Sobic.007G101900 - -
5 Sobic.010G110266 - -
6 Sobic.010G136400 - -
7 Sobic.008G122700 expressed protein -
8 Sobic.010G272600 expressed protein -
9 Sobic.006G063400 proteasome subunit, putative, expressed -
10 Sobic.002G156900 expressed protein -
11 Sobic.005G134501 - -
12 Sobic.001G197300 kinase, putative, expressed -
13 Sobic.005G164100 - -
14 Sobic.010G149700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.006G038901 - -
16 Sobic.008G076500 - -
17 Sobic.001G334200 nodulin, putative, expressed -
18 Sobic.010G222400 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.003G076600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
20 Sobic.007G100032 - -


Gene co-expression network
sample Sobic005G188200 Sobic005G188200 Sobic008G121400 Sobic008G121400 Sobic005G188200--Sobic008G121400 Sobic008G104100 Sobic008G104100 Sobic005G188200--Sobic008G104100 Sobic008G092932 Sobic008G092932 Sobic005G188200--Sobic008G092932 Sobic007G101900 Sobic007G101900 Sobic005G188200--Sobic007G101900 Sobic010G110266 Sobic010G110266 Sobic005G188200--Sobic010G110266 Sobic010G136400 Sobic010G136400 Sobic005G188200--Sobic010G136400 Sobic008G122700 Sobic008G122700 Sobic005G188200--Sobic008G122700 Sobic010G272600 Sobic010G272600 Sobic005G188200--Sobic010G272600 Sobic006G063400 Sobic006G063400 Sobic005G188200--Sobic006G063400 Sobic008G121400--Sobic007G101900 Sobic008G121400--Sobic008G092932 Sobic008G121400--Sobic010G136400 Sobic008G121400--Sobic006G063400 Sobic008G121400--Sobic010G110266 Sobic001G197300 Sobic001G197300 Sobic008G121400--Sobic001G197300 Sobic008G121400--Sobic005G188200 Sobic002G156900 Sobic002G156900 Sobic008G121400--Sobic002G156900 Sobic008G121400--Sobic008G122700 Sobic008G104100--Sobic007G101900 Sobic008G104100--Sobic010G136400 Sobic008G104100--Sobic001G197300 Sobic007G100032 Sobic007G100032 Sobic008G104100--Sobic007G100032 Sobic008G104100--Sobic010G272600 Sobic008G104100--Sobic006G063400 Sobic008G104100--Sobic008G121400 Sobic004G135000 Sobic004G135000 Sobic008G104100--Sobic004G135000 Sobic004G165800 Sobic004G165800 Sobic008G104100--Sobic004G165800 Sobic008G092932--Sobic008G121400 Sobic008G092932--Sobic002G156900 Sobic008G092932--Sobic007G101900 Sobic008G092932--Sobic010G136400 Sobic008G092932--Sobic010G110266 Sobic001G276700 Sobic001G276700 Sobic008G092932--Sobic001G276700 Sobic008G092932--Sobic008G122700 Sobic001G382266 Sobic001G382266 Sobic008G092932--Sobic001G382266 Sobic007G101900--Sobic010G136400 Sobic007G101900--Sobic008G121400 Sobic007G101900--Sobic006G063400 Sobic007G101900--Sobic001G197300 Sobic007G101900--Sobic008G092932 Sobic007G101900--Sobic007G100032 Sobic007G101900--Sobic008G104100 Sobic007G101900--Sobic010G110266 Sobic007G101900--Sobic002G156900 Sobic010G110266--Sobic008G121400 Sobic010G110266--Sobic006G063400 Sobic006G036500 Sobic006G036500 Sobic010G110266--Sobic006G036500 Sobic010G110266--Sobic010G136400 Sobic010G110266--Sobic002G156900 Sobic010G110266--Sobic007G101900 Sobic010G149700 Sobic010G149700 Sobic010G110266--Sobic010G149700 Sobic010G110266--Sobic008G092932 Sobic006G038800 Sobic006G038800 Sobic010G110266--Sobic006G038800 Sobic010G136400--Sobic007G101900 Sobic010G136400--Sobic001G197300 Sobic010G136400--Sobic006G063400 Sobic010G136400--Sobic008G121400 Sobic010G136400--Sobic007G100032 Sobic010G136400--Sobic008G104100 Sobic010G136400--Sobic010G110266 Sobic010G136400--Sobic008G092932 Sobic010G136400--Sobic004G135000 Sobic008G122700--Sobic008G121400 Sobic008G122700--Sobic008G092932 Sobic008G122700--Sobic007G101900 Sobic008G122700--Sobic010G110266 Sobic008G122700--Sobic002G156900 Sobic008G122700--Sobic005G188200 Sobic008G122700--Sobic010G136400 Sobic008G122700--Sobic006G063400 Sobic003G104800 Sobic003G104800 Sobic008G122700--Sobic003G104800 Sobic010G272600--Sobic008G104100 Sobic007G139650 Sobic007G139650 Sobic010G272600--Sobic007G139650 Sobic010G272600--Sobic005G188200 Sobic002G032200 Sobic002G032200 Sobic010G272600--Sobic002G032200 Sobic010G272600--Sobic007G101900 Sobic002G217100 Sobic002G217100 Sobic010G272600--Sobic002G217100 Sobic009G057400 Sobic009G057400 Sobic010G272600--Sobic009G057400 Sobic001G398500 Sobic001G398500 Sobic010G272600--Sobic001G398500 Sobic010G247500 Sobic010G247500 Sobic010G272600--Sobic010G247500 Sobic006G063400--Sobic010G136400 Sobic006G063400--Sobic001G197300 Sobic006G063400--Sobic007G101900 Sobic006G063400--Sobic007G100032 Sobic006G063400--Sobic008G121400 Sobic006G063400--Sobic010G110266 Sobic006G063400--Sobic008G104100 Sobic008G112900 Sobic008G112900 Sobic006G063400--Sobic008G112900 Sobic001G065900 Sobic001G065900 Sobic006G063400--Sobic001G065900
Octagon: transcription factors


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