Gene annotation
Transcriptome id Sobic.006G116801.1
Synonym -
Functional annotation -
UniProt A0A1Z5REF4
Pfam -
Panther DB PTHR36349 PTHR36349:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27250 : CLAVATA3
RAP-DB (Rice) LOC_Os04g39770.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G244100 "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed K09060: plant G-box-binding factor
2 Sobic.001G409400 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed -
3 Sobic.006G104000 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
4 Sobic.009G046200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed -
5 Sobic.008G087500 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
6 Sobic.002G097000 expressed protein -
7 Sobic.010G146500 RGH1A, putative, expressed -
8 Sobic.001G424000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fringe-related protein, putative, expressed -
9 Sobic.005G082860 - K09338: homeobox-leucine zipper protein
10 Sobic.004G101400 Up-reguralion under drought(PubMedID : 24916767)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
11 Sobic.001G373600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
12 Sobic.001G466450 - -
13 Sobic.001G466450 - -
14 Sobic.001G466450 - -
15 Sobic.001G466450 - -
16 Sobic.001G466450 - -
17 Sobic.001G466450 - -
18 Sobic.001G466450 - -
19 Sobic.007G164500 - -
20 Sobic.003G024600 CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -


Gene co-expression network
sample Sobic006G116801 Sobic006G116801 Sobic003G244100 Sobic003G244100 Sobic006G116801--Sobic003G244100 Sobic001G409400 Sobic001G409400 Sobic006G116801--Sobic001G409400 Sobic006G104000 Sobic006G104000 Sobic006G116801--Sobic006G104000 Sobic009G046200 Sobic009G046200 Sobic006G116801--Sobic009G046200 Sobic008G087500 Sobic008G087500 Sobic006G116801--Sobic008G087500 Sobic002G097000 Sobic002G097000 Sobic006G116801--Sobic002G097000 Sobic010G146500 Sobic010G146500 Sobic006G116801--Sobic010G146500 Sobic001G424000 Sobic001G424000 Sobic006G116801--Sobic001G424000 Sobic005G082860 Sobic005G082860 Sobic006G116801--Sobic005G082860 Sobic002G141800 Sobic002G141800 Sobic003G244100--Sobic002G141800 Sobic009G116700 Sobic009G116700 Sobic003G244100--Sobic009G116700 Sobic003G244100--Sobic009G046200 Sobic003G244100--Sobic001G409400 Sobic003G244100--Sobic006G104000 Sobic003G011400 Sobic003G011400 Sobic003G244100--Sobic003G011400 Sobic003G244100--Sobic002G097000 Sobic001G373600 Sobic001G373600 Sobic003G244100--Sobic001G373600 Sobic001G466450 Sobic001G466450 Sobic003G244100--Sobic001G466450 Sobic001G409400--Sobic009G046200 Sobic004G308300 Sobic004G308300 Sobic001G409400--Sobic004G308300 Sobic007G164500 Sobic007G164500 Sobic001G409400--Sobic007G164500 Sobic001G409400--Sobic003G244100 Sobic001G323600 Sobic001G323600 Sobic001G409400--Sobic001G323600 Sobic010G070750 Sobic010G070750 Sobic001G409400--Sobic010G070750 Sobic001G409400--Sobic001G373600 Sobic003G024600 Sobic003G024600 Sobic001G409400--Sobic003G024600 Sobic001G409400--Sobic002G097000 Sobic006G104000--Sobic009G046200 Sobic002G132500 Sobic002G132500 Sobic006G104000--Sobic002G132500 Sobic006G104000--Sobic003G011400 Sobic006G104000--Sobic003G024600 Sobic006G104000--Sobic001G466450 Sobic009G046200--Sobic001G373600 Sobic009G046200--Sobic001G466450 Sobic009G046200--Sobic007G164500 Sobic008G087500--Sobic010G146500 Sobic008G087500--Sobic003G244100 Sobic002G164960 Sobic002G164960 Sobic008G087500--Sobic002G164960 Sobic008G087500--Sobic006G116801 Sobic008G087500--Sobic001G424000 Sobic008G087500--Sobic001G409400 Sobic002G075800 Sobic002G075800 Sobic008G087500--Sobic002G075800 Sobic004G101400 Sobic004G101400 Sobic008G087500--Sobic004G101400 Sobic008G087800 Sobic008G087800 Sobic008G087500--Sobic008G087800 Sobic002G097000--Sobic001G373600 Sobic002G097000--Sobic001G466450 Sobic002G097000--Sobic007G164500 Sobic010G146500--Sobic008G087500 Sobic010G146500--Sobic004G101400 Sobic010G146500--Sobic006G116801 Sobic010G146500--Sobic006G104000 Sobic001G027800 Sobic001G027800 Sobic010G146500--Sobic001G027800 Sobic001G354800 Sobic001G354800 Sobic010G146500--Sobic001G354800 Sobic001G307000 Sobic001G307000 Sobic010G146500--Sobic001G307000 Sobic010G146500--Sobic008G087800 Sobic010G146500--Sobic003G244100 Sobic001G424000--Sobic003G244100 Sobic001G424000--Sobic002G141800 Sobic001G424000--Sobic009G116700 Sobic001G424000--Sobic006G104000 Sobic001G424000--Sobic001G409400 Sobic001G424000--Sobic009G046200 Sobic001G424000--Sobic008G087500 Sobic001G424000--Sobic006G116801 Sobic001G424000--Sobic002G097000 Sobic005G082860--Sobic002G097000 Sobic005G082860--Sobic001G466450 Sobic005G082860--Sobic003G024600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.