Gene annotation
| Transcriptome id | Sobic.001G424000.3,Sobic.001G424000.2 |
|---|---|
| Synonym | Sb01g039850 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) fringe-related protein, putative, expressed |
| UniProt | A0A1Z5SA87 |
| Pfam | PF02434 |
| Panther DB | PTHR10811:SF13 PTHR10811 |
| NCBI CDD | KOG2246; Galactosyltransferases |
| KEGG Orthology | - |
| Gene Ontology | GO:0016020; membrane GO:0016757transferase activity, transferring glycosyl groups |
Orthologs (automatic annotation)
| TAIR | AT2G37730 : Protein of unknown function (DUF604) |
|---|---|
| RAP-DB (Rice) | LOC_Os03g16334.1 : fringe-related protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a056731 , Zm00025a001793 , Zm00025a003144 , Zm00025a010091 |
| Brachypodium | KQK22378 , KQJ97584 , PNT78287 , KQJ84180 |
| Barley | HORVU4Hr1G084520.5 , HORVU4Hr1G084520.4 , HORVU4Hr1G084520.6 , HORVU4Hr1G084520.1 , HORVU4Hr1G084520.3 , HORVU4Hr1G084520.2 , HORVU4Hr1G060310.4 , HORVU4Hr1G060310.5 , HORVU4Hr1G060310.6 , HORVU4Hr1G060310.2 , HORVU4Hr1G060310.3 |
| Wheat | TraesCS6B02G266700 , TraesCS4D02G340600 , TraesCS6A02G258700 , TraesCS5A02G514600 , TraesCS2B02G414100 , TraesCS4D02G210600 , TraesCS4B02G345500 , TraesCS4A02G094600 , TraesCS6D02G239900 , TraesCS2A02G395800 , TraesCS1A02G183500 , TraesCS2D02G393500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G244100 | "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 2 | Sobic.002G141800 | expressed protein | - |
| 3 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 4 | Sobic.006G104000 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 5 | Sobic.001G409400 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed | - |
| 6 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 7 | Sobic.008G087500 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 8 | Sobic.006G116801 | - | - |
| 9 | Sobic.002G097000 | expressed protein | - |
| 10 | Sobic.005G088700 | expressed protein | - |
| 11 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 12 | Sobic.001G373600 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 13 | Sobic.003G024600 | CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 14 | Sobic.001G323600 | transporter family protein, putative, expressed | - |
| 15 | Sobic.006G142000 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 16 | Sobic.007G164500 | - | - |
| 17 | Sobic.001G466450 | - | - |
| 18 | Sobic.001G466450 | - | - |
| 19 | Sobic.001G466450 | - | - |
| 20 | Sobic.001G466450 | - | - |
Gene co-expression network
Octagon: transcription factors
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