Gene annotation
Transcriptome id Sobic.006G268900.1
Synonym Sb06g033070
Functional annotation "STKc_IRAK, catalytic domain of the serine/threonine kinases" (PubMedID : 29491869)
expressed protein
UniProt C5YAK6
Pfam PF01086
Panther DB PTHR10639 PTHR10639:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT2G20760 : Clathrin light chain protein
RAP-DB (Rice) LOC_Os04g58240.1 : expressed protein
MaizeGDB (Corn) Zm00025a057391 , Zm00025a009277
Brachypodium KQJ85320
Barley HORVU2Hr1G118930.3 , HORVU2Hr1G118930.1
Wheat TraesCS2D02G564200 , TraesCS2A02G590000 , TraesCS2A02G590000 , TraesCS2B02G594200 , TraesCS2A02G058000
Populus -


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cDNA sequences
Sobic.006G268900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G094200 - -
2 Sobic.004G227700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase, putative, expressed -
3 Sobic.004G250400 aluminum-activated malate transporter, putative, expressed -
4 Sobic.008G142200 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
5 Sobic.003G063400 glycosyltransferase family 43 protein, putative, expressed -
6 Sobic.008G072800 OsMADS33 - MADS-box family gene with MIKCc type-box, expressed -
7 Sobic.010G100700 HEAT repeat family protein, putative, expressed -
8 Sobic.004G033650 - -
9 Sobic.007G141900 resistance protein SlVe1 precursor, putative, expressed -
10 Sobic.006G134300 - -
11 Sobic.004G093700 tetraspanin family protein, putative, expressed -
12 Sobic.004G082600 OsFBX126 - F-box domain containing protein, expressed -
13 Sobic.002G012100 cytokinin inducible protein, putative, expressed -
14 Sobic.001G191500 expressed protein -
15 Sobic.003G263900 reticulon domain containing protein, putative, expressed -
16 Sobic.003G155000 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
17 Sobic.001G001800 expressed protein -
18 Sobic.001G190900 ABCG protein(PubMedID : 21265893)@"Orthologous gene of wheat Lr34 gene, expressed in accession AusTRCF 302546, but not expreesed in BTx623 possibly due to transposon insertions in intron 4"(PubMedID : 23117720)@pleiotropic drug resistance protein 15, putative, expressed -
19 Sobic.001G476600 Zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
20 Sobic.003G253700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G268900 Sobic006G268900 Sobic009G094200 Sobic009G094200 Sobic006G268900--Sobic009G094200 Sobic004G227700 Sobic004G227700 Sobic006G268900--Sobic004G227700 Sobic004G250400 Sobic004G250400 Sobic006G268900--Sobic004G250400 Sobic008G142200 Sobic008G142200 Sobic006G268900--Sobic008G142200 Sobic003G063400 Sobic003G063400 Sobic006G268900--Sobic003G063400 Sobic008G072800 Sobic008G072800 Sobic006G268900--Sobic008G072800 Sobic010G100700 Sobic010G100700 Sobic006G268900--Sobic010G100700 Sobic004G033650 Sobic004G033650 Sobic006G268900--Sobic004G033650 Sobic007G141900 Sobic007G141900 Sobic006G268900--Sobic007G141900 Sobic009G094200--Sobic008G142200 Sobic001G001800 Sobic001G001800 Sobic009G094200--Sobic001G001800 Sobic009G094200--Sobic004G227700 Sobic003G263900 Sobic003G263900 Sobic009G094200--Sobic003G263900 Sobic004G082600 Sobic004G082600 Sobic009G094200--Sobic004G082600 Sobic001G190900 Sobic001G190900 Sobic009G094200--Sobic001G190900 Sobic009G094200--Sobic007G141900 Sobic001G038700 Sobic001G038700 Sobic009G094200--Sobic001G038700 Sobic009G026600 Sobic009G026600 Sobic009G094200--Sobic009G026600 Sobic004G227700--Sobic008G142200 Sobic002G187900 Sobic002G187900 Sobic004G227700--Sobic002G187900 Sobic004G227700--Sobic009G094200 Sobic004G227700--Sobic004G082600 Sobic004G227700--Sobic003G263900 Sobic003G155000 Sobic003G155000 Sobic004G227700--Sobic003G155000 Sobic004G227700--Sobic003G063400 Sobic006G134300 Sobic006G134300 Sobic004G227700--Sobic006G134300 Sobic004G227700--Sobic004G250400 Sobic004G250400--Sobic003G063400 Sobic004G250400--Sobic009G026600 Sobic004G250400--Sobic004G227700 Sobic001G370800 Sobic001G370800 Sobic004G250400--Sobic001G370800 Sobic004G093700 Sobic004G093700 Sobic004G250400--Sobic004G093700 Sobic004G058400 Sobic004G058400 Sobic004G250400--Sobic004G058400 Sobic004G250400--Sobic004G082600 Sobic010G012200 Sobic010G012200 Sobic004G250400--Sobic010G012200 Sobic004G250400--Sobic006G268900 Sobic008G142200--Sobic004G227700 Sobic001G191500 Sobic001G191500 Sobic008G142200--Sobic001G191500 Sobic008G142200--Sobic009G094200 Sobic008G190600 Sobic008G190600 Sobic008G142200--Sobic008G190600 Sobic008G142200--Sobic003G263900 Sobic008G142200--Sobic004G033650 Sobic009G026700 Sobic009G026700 Sobic008G142200--Sobic009G026700 Sobic008G142200--Sobic001G038700 Sobic008G142200--Sobic008G072800 Sobic003G063400--Sobic004G250400 Sobic003G063400--Sobic009G026600 Sobic003G063400--Sobic004G093700 Sobic003G063400--Sobic010G012200 Sobic003G063400--Sobic004G227700 Sobic003G063400--Sobic003G263900 Sobic007G183600 Sobic007G183600 Sobic003G063400--Sobic007G183600 Sobic003G063400--Sobic010G100700 Sobic003G063400--Sobic008G142200 Sobic008G072800--Sobic007G141900 Sobic008G072800--Sobic010G100700 Sobic008G072800--Sobic008G142200 Sobic006G072701 Sobic006G072701 Sobic008G072800--Sobic006G072701 Sobic002G012100 Sobic002G012100 Sobic008G072800--Sobic002G012100 Sobic003G023450 Sobic003G023450 Sobic008G072800--Sobic003G023450 Sobic002G324801 Sobic002G324801 Sobic008G072800--Sobic002G324801 Sobic008G132500 Sobic008G132500 Sobic008G072800--Sobic008G132500 Sobic008G072800--Sobic001G191500 Sobic010G100700--Sobic004G093700 Sobic010G100700--Sobic008G072800 Sobic010G100700--Sobic003G023450 Sobic010G100700--Sobic007G141900 Sobic010G100700--Sobic008G142200 Sobic010G100700--Sobic003G063400 Sobic010G100700--Sobic002G324801 Sobic010G100700--Sobic002G012100 Sobic010G100700--Sobic008G132500 Sobic004G033650--Sobic001G001800 Sobic009G074800 Sobic009G074800 Sobic004G033650--Sobic009G074800 Sobic008G083100 Sobic008G083100 Sobic004G033650--Sobic008G083100 Sobic004G033650--Sobic008G142200 Sobic004G033650--Sobic009G026700 Sobic004G033650--Sobic001G191500 Sobic004G033650--Sobic007G141900 Sobic004G033650--Sobic008G190600 Sobic004G118000 Sobic004G118000 Sobic004G033650--Sobic004G118000 Sobic007G141900--Sobic008G072800 Sobic007G141900--Sobic002G012100 Sobic002G009000 Sobic002G009000 Sobic007G141900--Sobic002G009000 Sobic007G141900--Sobic008G132500 Sobic010G196466 Sobic010G196466 Sobic007G141900--Sobic010G196466 Sobic007G141900--Sobic010G100700 Sobic007G141900--Sobic006G072701 Sobic007G141900--Sobic004G033650 Sobic007G141900--Sobic008G083100
Octagon: transcription factors


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