Gene annotation
| Transcriptome id | Sobic.007G073500.1 |
|---|---|
| Synonym | Sb07g005830, ATSMO1, ATSMO1-1, SMO1-1 |
| Functional annotation | fatty acid hydroxylase, putative, expressed |
| UniProt | A0A1Z5R8G5 |
| Pfam | PF04116 |
| Panther DB | PTHR11863 PTHR11863:SF51 |
| NCBI CDD | KOG0873; C-4 sterol methyl oxidase |
| KEGG Orthology | K14423; plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding |
Orthologs (automatic annotation)
| TAIR | AT4G12110 : sterol-4alpha-methyl oxidase 1-1 |
|---|---|
| RAP-DB (Rice) | LOC_Os10g39810.1 : fatty acid hydroxylase, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | TraesCS1D02G208900 , TraesCS1A02G205700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G140850 | - | - |
| 2 | Sobic.004G140850 | - | - |
| 3 | Sobic.004G140850 | - | - |
| 4 | Sobic.002G379201 | - | - |
| 5 | Sobic.002G315900 | autophagy-related protein, putative, expressed | K08341: GABARAP, ATG8, GABA(A) receptor-associated protein |
| 6 | Sobic.007G066900 | Cupin domain containing protein, expressed | - |
| 7 | Sobic.007G067608 | - | - |
| 8 | Sobic.004G340200 | dehydrogenase, putative, expressed | K09753: cinnamoyl-CoA reductase |
| 9 | Sobic.003G278100 | expressed protein | - |
| 10 | Sobic.003G293500 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein 101, putative, expressed | K03695: ATP-dependent Clp protease ATP-binding subunit ClpB |
| 11 | Sobic.004G210700 | ATOZI1, putative, expressed | - |
| 12 | Sobic.008G149900 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.010G032000 | Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed | - |
| 14 | Sobic.001G237400 | heavy-metal-associated domain-containing protein, putative, expressed | - |
| 15 | Sobic.001G129700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed | - |
| 16 | Sobic.009G123400 | - | - |
| 17 | Sobic.005G215601 | - | - |
| 18 | Sobic.007G066500 | Cupin domain containing protein, expressed | - |
| 19 | Sobic.004G220500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phenylalanine ammonia-lyase, putative, expressed | K10775: phenylalanine ammonia-lyase |
| 20 | Sobic.001G436800 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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