Gene annotation
Transcriptome id Sobic.007G145901.1
Synonym -
Functional annotation -
UniProt A0A1Z5RAV7
Pfam PF00421
Panther DB PTHR33180 PTHR33180:SF4
NCBI CDD -
KEGG Orthology K02705; photosystem II CP43 chlorophyll apoprotein
Gene Ontology GO:0016168; chlorophyll binding GO:0016020membrane GO:0009767photosynthetic electron transport chain GO:0009521photosystem


Orthologs (automatic annotation)
TAIR ATCG00280 : photosystem II reaction center protein C
RAP-DB (Rice) LOC_Os10g21212.1 : photosystem II 44 kDa reaction center protein, putative, expressed
MaizeGDB (Corn) Zm00025a057596 , Zm00025a057683 , Zm00025a010040 , Zm00025a058110 , Zm00025a058078 , Zm00025a057878 , Zm00025a057699
Brachypodium KQK20682 , KQK24086
Barley HORVU1Hr1G042530.2 , AGP50741
Wheat -
Populus PNS90496


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G299900 photosystem II 44 kDa reaction center protein, putative, expressed K02705: photosystem II CP43 chlorophyll apoprotein
2 Sobic.010G124700 lectin-like receptor kinase, putative, expressed -
3 Sobic.003G395800 photosystem II 44 kDa reaction center protein, putative, expressed K02705: photosystem II CP43 chlorophyll apoprotein
4 Sobic.007G013800 OsMADS26 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.003G311100 "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
6 Sobic.010G244800 expressed protein -
7 Sobic.001G075950 - -
8 Sobic.003G024450 - -
9 Sobic.004G187701 - -
10 Sobic.004G143550 - -
11 Sobic.002G367000 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
12 Sobic.009G079400 EMB2261, putative, expressed -
13 Sobic.003G396050 - -
14 Sobic.004G023800 verticillium wilt disease resistance protein, putative, expressed -
15 Sobic.K004201 - -
16 Sobic.005G194400 ribulose bisphosphate carboxylase large chain precursor, putative, expressed K01601: ribulose-bisphosphate carboxylase large chain
17 Sobic.004G194600 - -
18 Sobic.001G276500 photosystem II 44 kDa reaction center protein, putative, expressed K02705: photosystem II CP43 chlorophyll apoprotein
19 Sobic.010G094750 - -
20 Sobic.001G237100 lectin-like receptor kinase, putative, expressed -


Gene co-expression network
sample Sobic007G145901 Sobic007G145901 Sobic001G299900 Sobic001G299900 Sobic007G145901--Sobic001G299900 Sobic010G124700 Sobic010G124700 Sobic007G145901--Sobic010G124700 Sobic003G395800 Sobic003G395800 Sobic007G145901--Sobic003G395800 Sobic007G013800 Sobic007G013800 Sobic007G145901--Sobic007G013800 Sobic003G311100 Sobic003G311100 Sobic007G145901--Sobic003G311100 Sobic010G244800 Sobic010G244800 Sobic007G145901--Sobic010G244800 Sobic001G075950 Sobic001G075950 Sobic007G145901--Sobic001G075950 Sobic003G024450 Sobic003G024450 Sobic007G145901--Sobic003G024450 Sobic004G187701 Sobic004G187701 Sobic007G145901--Sobic004G187701 Sobic001G299900--Sobic003G395800 Sobic001G276500 Sobic001G276500 Sobic001G299900--Sobic001G276500 Sobic002G142950 Sobic002G142950 Sobic001G299900--Sobic002G142950 Sobic001G299900--Sobic007G145901 Sobic010G225175 Sobic010G225175 Sobic001G299900--Sobic010G225175 Sobic001G202800 Sobic001G202800 Sobic001G299900--Sobic001G202800 Sobic010G052100 Sobic010G052100 Sobic001G299900--Sobic010G052100 Sobic007G127200 Sobic007G127200 Sobic001G299900--Sobic007G127200 Sobic002G142400 Sobic002G142400 Sobic001G299900--Sobic002G142400 Sobic010G124700--Sobic007G145901 Sobic010G124700--Sobic003G311100 Sobic009G087360 Sobic009G087360 Sobic010G124700--Sobic009G087360 SobicK004201 SobicK004201 Sobic010G124700--SobicK004201 Sobic010G124700--Sobic003G024450 Sobic010G023132 Sobic010G023132 Sobic010G124700--Sobic010G023132 Sobic006G128233 Sobic006G128233 Sobic010G124700--Sobic006G128233 Sobic006G192150 Sobic006G192150 Sobic010G124700--Sobic006G192150 Sobic008G133750 Sobic008G133750 Sobic010G124700--Sobic008G133750 Sobic003G395800--Sobic010G225175 Sobic002G154450 Sobic002G154450 Sobic003G395800--Sobic002G154450 Sobic003G395800--Sobic007G127200 Sobic003G395800--Sobic010G052100 Sobic001G323101 Sobic001G323101 Sobic003G395800--Sobic001G323101 Sobic004G127350 Sobic004G127350 Sobic003G395800--Sobic004G127350 Sobic001G045900 Sobic001G045900 Sobic003G395800--Sobic001G045900 Sobic004G134400 Sobic004G134400 Sobic003G395800--Sobic004G134400 Sobic010G247750 Sobic010G247750 Sobic003G395800--Sobic010G247750 Sobic007G013800--Sobic007G145901 Sobic009G072300 Sobic009G072300 Sobic007G013800--Sobic009G072300 Sobic002G172000 Sobic002G172000 Sobic007G013800--Sobic002G172000 Sobic001G237100 Sobic001G237100 Sobic007G013800--Sobic001G237100 Sobic007G013800--Sobic003G395800 Sobic010G061300 Sobic010G061300 Sobic007G013800--Sobic010G061300 Sobic007G013800--Sobic001G299900 Sobic007G013800--Sobic003G311100 Sobic002G367000 Sobic002G367000 Sobic007G013800--Sobic002G367000 Sobic003G123950 Sobic003G123950 Sobic003G311100--Sobic003G123950 Sobic010G123650 Sobic010G123650 Sobic003G311100--Sobic010G123650 Sobic002G286500 Sobic002G286500 Sobic003G311100--Sobic002G286500 Sobic006G171801 Sobic006G171801 Sobic003G311100--Sobic006G171801 Sobic003G168700 Sobic003G168700 Sobic003G311100--Sobic003G168700 Sobic001G087850 Sobic001G087850 Sobic003G311100--Sobic001G087850 Sobic003G396050 Sobic003G396050 Sobic003G311100--Sobic003G396050 Sobic004G215650 Sobic004G215650 Sobic003G311100--Sobic004G215650 Sobic003G404050 Sobic003G404050 Sobic003G311100--Sobic003G404050 Sobic008G056000 Sobic008G056000 Sobic010G244800--Sobic008G056000 Sobic006G065000 Sobic006G065000 Sobic010G244800--Sobic006G065000 Sobic001G504300 Sobic001G504300 Sobic010G244800--Sobic001G504300 Sobic006G064900 Sobic006G064900 Sobic010G244800--Sobic006G064900 Sobic001G440401 Sobic001G440401 Sobic010G244800--Sobic001G440401 Sobic002G025900 Sobic002G025900 Sobic010G244800--Sobic002G025900 Sobic004G023800 Sobic004G023800 Sobic010G244800--Sobic004G023800 Sobic003G288700 Sobic003G288700 Sobic010G244800--Sobic003G288700 Sobic010G244800--Sobic001G087850 Sobic009G150100 Sobic009G150100 Sobic001G075950--Sobic009G150100 Sobic001G322766 Sobic001G322766 Sobic001G075950--Sobic001G322766 Sobic004G289700 Sobic004G289700 Sobic001G075950--Sobic004G289700 Sobic007G100275 Sobic007G100275 Sobic001G075950--Sobic007G100275 Sobic001G256600 Sobic001G256600 Sobic001G075950--Sobic001G256600 Sobic010G233300 Sobic010G233300 Sobic001G075950--Sobic010G233300 Sobic003G261700 Sobic003G261700 Sobic001G075950--Sobic003G261700 Sobic003G091100 Sobic003G091100 Sobic001G075950--Sobic003G091100 Sobic009G066850 Sobic009G066850 Sobic001G075950--Sobic009G066850 Sobic004G143550 Sobic004G143550 Sobic003G024450--Sobic004G143550 Sobic003G024450--Sobic004G023800 Sobic010G149000 Sobic010G149000 Sobic003G024450--Sobic010G149000 Sobic004G092950 Sobic004G092950 Sobic003G024450--Sobic004G092950 Sobic003G388201 Sobic003G388201 Sobic003G024450--Sobic003G388201 Sobic003G024450--Sobic001G202800 Sobic002G117800 Sobic002G117800 Sobic003G024450--Sobic002G117800 Sobic003G365450 Sobic003G365450 Sobic003G024450--Sobic003G365450 Sobic008G060800 Sobic008G060800 Sobic003G024450--Sobic008G060800 Sobic001G436450 Sobic001G436450 Sobic004G187701--Sobic001G436450 Sobic009G079400 Sobic009G079400 Sobic004G187701--Sobic009G079400 Sobic004G187701--Sobic001G087850 Sobic006G176900 Sobic006G176900 Sobic004G187701--Sobic006G176900 Sobic002G147550 Sobic002G147550 Sobic004G187701--Sobic002G147550 Sobic004G207733 Sobic004G207733 Sobic004G187701--Sobic004G207733 Sobic004G127733 Sobic004G127733 Sobic004G187701--Sobic004G127733 Sobic003G244250 Sobic003G244250 Sobic004G187701--Sobic003G244250 Sobic004G187701--Sobic010G123650
Octagon: transcription factors


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