Gene annotation
Transcriptome id Sobic.007G013800.1
Synonym Sb07g001250, AGL12, XAL1
Functional annotation OsMADS26 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5YLY7
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF152
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G71692 : AGAMOUS-like 12
RAP-DB (Rice) LOC_Os08g02070.1 : OsMADS26 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a040224 , Zm00025a030273 , Zm00025a035864
Brachypodium KQJ94842
Barley HORVU7Hr1G076310.14 , HORVU7Hr1G076310.15 , HORVU7Hr1G076310.12 , HORVU7Hr1G076310.13 , HORVU7Hr1G076310.10 , HORVU7Hr1G076310.11 , HORVU2Hr1G077220.33 , HORVU7Hr1G076310.8 , HORVU7Hr1G076310.9 , HORVU2Hr1G077220.34 , HORVU7Hr1G076310.4 , HORVU7Hr1G076310.5 , HORVU7Hr1G076310.6 , HORVU7Hr1G076310.7 , HORVU7Hr1G076310.1 , HORVU7Hr1G076310.2 , HORVU7Hr1G076310.3
Wheat TraesCS7A02G319400 , TraesCS7A02G319400 , TraesCS7D02G315900 , TraesCS7D02G315900 , TraesCS7D02G315900 , TraesCS7B02G220200 , TraesCS7B02G220200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G145901 - K02705: photosystem II CP43 chlorophyll apoprotein
2 Sobic.009G072300 - -
3 Sobic.002G172000 similar to Os09g0325700 protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
4 Sobic.001G237100 lectin-like receptor kinase, putative, expressed -
5 Sobic.003G395800 photosystem II 44 kDa reaction center protein, putative, expressed K02705: photosystem II CP43 chlorophyll apoprotein
6 Sobic.010G061300 receptor protein kinase, putative, expressed -
7 Sobic.001G299900 photosystem II 44 kDa reaction center protein, putative, expressed K02705: photosystem II CP43 chlorophyll apoprotein
8 Sobic.003G311100 "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
9 Sobic.002G367000 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
10 Sobic.006G217400 expressed protein -
11 Sobic.010G124700 lectin-like receptor kinase, putative, expressed -
12 Sobic.004G304800 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
13 Sobic.005G194400 ribulose bisphosphate carboxylase large chain precursor, putative, expressed K01601: ribulose-bisphosphate carboxylase large chain
14 Sobic.001G276500 photosystem II 44 kDa reaction center protein, putative, expressed K02705: photosystem II CP43 chlorophyll apoprotein
15 Sobic.004G187701 - -
16 Sobic.004G127733 - -
17 Sobic.009G079400 EMB2261, putative, expressed -
18 Sobic.008G040800 OsFBX396 - F-box domain containing protein, expressed -
19 Sobic.006G212200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
20 Sobic.008G093300 - -


Gene co-expression network
sample Sobic007G013800 Sobic007G013800 Sobic007G145901 Sobic007G145901 Sobic007G013800--Sobic007G145901 Sobic009G072300 Sobic009G072300 Sobic007G013800--Sobic009G072300 Sobic002G172000 Sobic002G172000 Sobic007G013800--Sobic002G172000 Sobic001G237100 Sobic001G237100 Sobic007G013800--Sobic001G237100 Sobic003G395800 Sobic003G395800 Sobic007G013800--Sobic003G395800 Sobic010G061300 Sobic010G061300 Sobic007G013800--Sobic010G061300 Sobic001G299900 Sobic001G299900 Sobic007G013800--Sobic001G299900 Sobic003G311100 Sobic003G311100 Sobic007G013800--Sobic003G311100 Sobic002G367000 Sobic002G367000 Sobic007G013800--Sobic002G367000 Sobic007G145901--Sobic001G299900 Sobic010G124700 Sobic010G124700 Sobic007G145901--Sobic010G124700 Sobic007G145901--Sobic003G395800 Sobic007G145901--Sobic007G013800 Sobic007G145901--Sobic003G311100 Sobic010G244800 Sobic010G244800 Sobic007G145901--Sobic010G244800 Sobic001G075950 Sobic001G075950 Sobic007G145901--Sobic001G075950 Sobic003G024450 Sobic003G024450 Sobic007G145901--Sobic003G024450 Sobic004G187701 Sobic004G187701 Sobic007G145901--Sobic004G187701 Sobic009G072300--Sobic007G013800 Sobic004G055300 Sobic004G055300 Sobic009G072300--Sobic004G055300 Sobic009G072300--Sobic001G237100 Sobic001G074800 Sobic001G074800 Sobic009G072300--Sobic001G074800 Sobic003G279700 Sobic003G279700 Sobic009G072300--Sobic003G279700 Sobic003G358100 Sobic003G358100 Sobic009G072300--Sobic003G358100 Sobic009G072300--Sobic010G061300 Sobic009G207800 Sobic009G207800 Sobic009G072300--Sobic009G207800 Sobic007G043750 Sobic007G043750 Sobic009G072300--Sobic007G043750 Sobic002G038733 Sobic002G038733 Sobic002G172000--Sobic002G038733 Sobic004G219700 Sobic004G219700 Sobic002G172000--Sobic004G219700 Sobic010G231900 Sobic010G231900 Sobic002G172000--Sobic010G231900 Sobic002G172000--Sobic007G013800 Sobic010G245900 Sobic010G245900 Sobic002G172000--Sobic010G245900 Sobic010G146500 Sobic010G146500 Sobic002G172000--Sobic010G146500 Sobic008G087500 Sobic008G087500 Sobic002G172000--Sobic008G087500 Sobic008G087800 Sobic008G087800 Sobic002G172000--Sobic008G087800 Sobic008G186300 Sobic008G186300 Sobic002G172000--Sobic008G186300 Sobic001G205950 Sobic001G205950 Sobic001G237100--Sobic001G205950 Sobic008G156800 Sobic008G156800 Sobic001G237100--Sobic008G156800 Sobic008G116800 Sobic008G116800 Sobic001G237100--Sobic008G116800 Sobic003G238750 Sobic003G238750 Sobic001G237100--Sobic003G238750 Sobic010G053700 Sobic010G053700 Sobic001G237100--Sobic010G053700 Sobic001G090600 Sobic001G090600 Sobic001G237100--Sobic001G090600 Sobic010G176000 Sobic010G176000 Sobic001G237100--Sobic010G176000 Sobic003G406850 Sobic003G406850 Sobic001G237100--Sobic003G406850 Sobic001G062066 Sobic001G062066 Sobic001G237100--Sobic001G062066 Sobic010G225175 Sobic010G225175 Sobic003G395800--Sobic010G225175 Sobic002G154450 Sobic002G154450 Sobic003G395800--Sobic002G154450 Sobic007G127200 Sobic007G127200 Sobic003G395800--Sobic007G127200 Sobic010G052100 Sobic010G052100 Sobic003G395800--Sobic010G052100 Sobic001G323101 Sobic001G323101 Sobic003G395800--Sobic001G323101 Sobic004G127350 Sobic004G127350 Sobic003G395800--Sobic004G127350 Sobic001G045900 Sobic001G045900 Sobic003G395800--Sobic001G045900 Sobic004G134400 Sobic004G134400 Sobic003G395800--Sobic004G134400 Sobic010G247750 Sobic010G247750 Sobic003G395800--Sobic010G247750 Sobic007G006000 Sobic007G006000 Sobic010G061300--Sobic007G006000 Sobic010G061300--Sobic004G055300 Sobic002G325000 Sobic002G325000 Sobic010G061300--Sobic002G325000 Sobic010G061300--Sobic010G244800 Sobic008G043450 Sobic008G043450 Sobic010G061300--Sobic008G043450 Sobic003G373700 Sobic003G373700 Sobic010G061300--Sobic003G373700 Sobic001G440401 Sobic001G440401 Sobic010G061300--Sobic001G440401 Sobic002G168750 Sobic002G168750 Sobic010G061300--Sobic002G168750 Sobic005G183900 Sobic005G183900 Sobic010G061300--Sobic005G183900 Sobic001G299900--Sobic003G395800 Sobic001G276500 Sobic001G276500 Sobic001G299900--Sobic001G276500 Sobic002G142950 Sobic002G142950 Sobic001G299900--Sobic002G142950 Sobic001G299900--Sobic007G145901 Sobic001G299900--Sobic010G225175 Sobic001G202800 Sobic001G202800 Sobic001G299900--Sobic001G202800 Sobic001G299900--Sobic010G052100 Sobic001G299900--Sobic007G127200 Sobic002G142400 Sobic002G142400 Sobic001G299900--Sobic002G142400 Sobic003G123950 Sobic003G123950 Sobic003G311100--Sobic003G123950 Sobic010G123650 Sobic010G123650 Sobic003G311100--Sobic010G123650 Sobic002G286500 Sobic002G286500 Sobic003G311100--Sobic002G286500 Sobic006G171801 Sobic006G171801 Sobic003G311100--Sobic006G171801 Sobic003G168700 Sobic003G168700 Sobic003G311100--Sobic003G168700 Sobic001G087850 Sobic001G087850 Sobic003G311100--Sobic001G087850 Sobic003G396050 Sobic003G396050 Sobic003G311100--Sobic003G396050 Sobic004G215650 Sobic004G215650 Sobic003G311100--Sobic004G215650 Sobic003G404050 Sobic003G404050 Sobic003G311100--Sobic003G404050 Sobic003G257650 Sobic003G257650 Sobic002G367000--Sobic003G257650 Sobic006G038050 Sobic006G038050 Sobic002G367000--Sobic006G038050 Sobic003G198850 Sobic003G198850 Sobic002G367000--Sobic003G198850 Sobic007G190600 Sobic007G190600 Sobic002G367000--Sobic007G190600 Sobic003G383000 Sobic003G383000 Sobic002G367000--Sobic003G383000 Sobic002G149500 Sobic002G149500 Sobic002G367000--Sobic002G149500 Sobic001G175200 Sobic001G175200 Sobic002G367000--Sobic001G175200 Sobic002G246100 Sobic002G246100 Sobic002G367000--Sobic002G246100 SobicK004201 SobicK004201 Sobic002G367000--SobicK004201
Octagon: transcription factors


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