Gene annotation
Transcriptome id Sobic.002G172000.1
Synonym HAI3, Sb02g022090,
Functional annotation similar to Os09g0325700 protein (PubMedID : 29862293)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
protein phosphatase 2C, putative, expressed
UniProt C5X9V1
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF334
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K14497; protein phosphatase 2C
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT2G29380 : highly ABA-induced PP2C gene 3
RAP-DB (Rice) LOC_Os09g15670.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a046498 , Zm00025a036659 , Zm00025a013753 , Zm00025a001791
Brachypodium KQK04770
Barley HORVU1Hr1G090360.6 , HORVU1Hr1G090360.9 , HORVU1Hr1G090360.8 , HORVU1Hr1G090360.3 , HORVU1Hr1G090360.2 , HORVU1Hr1G090360.7 , HORVU1Hr1G090360.5 , HORVU1Hr1G090360.4 , HORVU3Hr1G085930.2 , HORVU3Hr1G085930.3 , HORVU3Hr1G085930.1 , HORVU3Hr1G085930.6 , HORVU3Hr1G085930.4 , HORVU3Hr1G085930.5
Wheat TraesCS1B02G441400 , TraesCS3D02G355900 , TraesCS3B02G394600 , TraesCS3B02G394600 , TraesCS3A02G362200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G172000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G038733 - -
2 Sobic.004G219700 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
3 Sobic.010G231900 early nodulin 20 precursor, putative, expressed -
4 Sobic.007G013800 OsMADS26 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.010G245900 - -
6 Sobic.010G146500 RGH1A, putative, expressed -
7 Sobic.008G087500 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
8 Sobic.008G087800 expressed protein -
9 Sobic.008G186300 receptor-like protein kinase HAIKU2 precursor, putative, expressed -
10 Sobic.003G417500 ZOS1-23 - C2H2 zinc finger protein, expressed -
11 Sobic.001G027800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@OsMan05 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
12 Sobic.006G272700 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
13 Sobic.003G368300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed K14432: ABA responsive element binding factor
14 Sobic.003G327300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.009G054450 - -
16 Sobic.009G182400 circadian clock coupling factor ZGT, putative, expressed -
17 Sobic.002G207100 - -
18 Sobic.009G064400 cytochrome P450 71A1, putative, expressed -
19 Sobic.003G064300 - -
20 Sobic.008G040900 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family


Gene co-expression network
sample Sobic002G172000 Sobic002G172000 Sobic002G038733 Sobic002G038733 Sobic002G172000--Sobic002G038733 Sobic004G219700 Sobic004G219700 Sobic002G172000--Sobic004G219700 Sobic010G231900 Sobic010G231900 Sobic002G172000--Sobic010G231900 Sobic007G013800 Sobic007G013800 Sobic002G172000--Sobic007G013800 Sobic010G245900 Sobic010G245900 Sobic002G172000--Sobic010G245900 Sobic010G146500 Sobic010G146500 Sobic002G172000--Sobic010G146500 Sobic008G087500 Sobic008G087500 Sobic002G172000--Sobic008G087500 Sobic008G087800 Sobic008G087800 Sobic002G172000--Sobic008G087800 Sobic008G186300 Sobic008G186300 Sobic002G172000--Sobic008G186300 Sobic002G038733--Sobic008G186300 Sobic002G038733--Sobic002G172000 Sobic008G040900 Sobic008G040900 Sobic002G038733--Sobic008G040900 Sobic001G460300 Sobic001G460300 Sobic002G038733--Sobic001G460300 Sobic006G194600 Sobic006G194600 Sobic002G038733--Sobic006G194600 Sobic005G121200 Sobic005G121200 Sobic002G038733--Sobic005G121200 Sobic003G278700 Sobic003G278700 Sobic002G038733--Sobic003G278700 Sobic002G038733--Sobic004G219700 Sobic005G061000 Sobic005G061000 Sobic002G038733--Sobic005G061000 Sobic004G219700--Sobic010G245900 Sobic003G397400 Sobic003G397400 Sobic004G219700--Sobic003G397400 Sobic007G073750 Sobic007G073750 Sobic004G219700--Sobic007G073750 Sobic003G137900 Sobic003G137900 Sobic004G219700--Sobic003G137900 Sobic006G272700 Sobic006G272700 Sobic004G219700--Sobic006G272700 Sobic010G253500 Sobic010G253500 Sobic004G219700--Sobic010G253500 Sobic001G210250 Sobic001G210250 Sobic004G219700--Sobic001G210250 Sobic003G083000 Sobic003G083000 Sobic004G219700--Sobic003G083000 Sobic005G016900 Sobic005G016900 Sobic004G219700--Sobic005G016900 Sobic009G161800 Sobic009G161800 Sobic010G231900--Sobic009G161800 Sobic009G182400 Sobic009G182400 Sobic010G231900--Sobic009G182400 Sobic003G064300 Sobic003G064300 Sobic010G231900--Sobic003G064300 Sobic002G207100 Sobic002G207100 Sobic010G231900--Sobic002G207100 Sobic010G231900--Sobic006G272700 Sobic009G064400 Sobic009G064400 Sobic010G231900--Sobic009G064400 Sobic007G143100 Sobic007G143100 Sobic010G231900--Sobic007G143100 Sobic010G231900--Sobic008G040900 Sobic007G143200 Sobic007G143200 Sobic010G231900--Sobic007G143200 Sobic007G145901 Sobic007G145901 Sobic007G013800--Sobic007G145901 Sobic009G072300 Sobic009G072300 Sobic007G013800--Sobic009G072300 Sobic007G013800--Sobic002G172000 Sobic001G237100 Sobic001G237100 Sobic007G013800--Sobic001G237100 Sobic003G395800 Sobic003G395800 Sobic007G013800--Sobic003G395800 Sobic010G061300 Sobic010G061300 Sobic007G013800--Sobic010G061300 Sobic001G299900 Sobic001G299900 Sobic007G013800--Sobic001G299900 Sobic003G311100 Sobic003G311100 Sobic007G013800--Sobic003G311100 Sobic002G367000 Sobic002G367000 Sobic007G013800--Sobic002G367000 Sobic010G245900--Sobic003G083000 Sobic010G245900--Sobic003G397400 Sobic007G169600 Sobic007G169600 Sobic010G245900--Sobic007G169600 Sobic010G245900--Sobic007G073750 Sobic010G245900--Sobic007G143100 Sobic010G245900--Sobic005G016900 Sobic010G245900--Sobic007G143200 Sobic009G076700 Sobic009G076700 Sobic010G245900--Sobic009G076700 Sobic010G245900--Sobic004G219700 Sobic010G146500--Sobic008G087500 Sobic004G101400 Sobic004G101400 Sobic010G146500--Sobic004G101400 Sobic006G116801 Sobic006G116801 Sobic010G146500--Sobic006G116801 Sobic006G104000 Sobic006G104000 Sobic010G146500--Sobic006G104000 Sobic001G027800 Sobic001G027800 Sobic010G146500--Sobic001G027800 Sobic001G354800 Sobic001G354800 Sobic010G146500--Sobic001G354800 Sobic001G307000 Sobic001G307000 Sobic010G146500--Sobic001G307000 Sobic010G146500--Sobic008G087800 Sobic003G244100 Sobic003G244100 Sobic010G146500--Sobic003G244100 Sobic008G087500--Sobic010G146500 Sobic008G087500--Sobic003G244100 Sobic002G164960 Sobic002G164960 Sobic008G087500--Sobic002G164960 Sobic008G087500--Sobic006G116801 Sobic001G424000 Sobic001G424000 Sobic008G087500--Sobic001G424000 Sobic001G409400 Sobic001G409400 Sobic008G087500--Sobic001G409400 Sobic002G075800 Sobic002G075800 Sobic008G087500--Sobic002G075800 Sobic008G087500--Sobic004G101400 Sobic008G087500--Sobic008G087800 Sobic008G087800--Sobic010G146500 Sobic008G087800--Sobic008G087500 Sobic008G087800--Sobic002G038733 Sobic008G087800--Sobic002G172000 Sobic009G081700 Sobic009G081700 Sobic008G087800--Sobic009G081700 Sobic003G417500 Sobic003G417500 Sobic008G087800--Sobic003G417500 Sobic005G062500 Sobic005G062500 Sobic008G087800--Sobic005G062500 Sobic008G087800--Sobic003G244100 Sobic008G087800--Sobic004G101400 Sobic008G186300--Sobic002G038733 Sobic008G186300--Sobic008G040900 Sobic008G186300--Sobic003G417500 Sobic009G030200 Sobic009G030200 Sobic008G186300--Sobic009G030200 Sobic004G045800 Sobic004G045800 Sobic008G186300--Sobic004G045800 Sobic003G227600 Sobic003G227600 Sobic008G186300--Sobic003G227600 Sobic004G172100 Sobic004G172100 Sobic008G186300--Sobic004G172100 Sobic008G186300--Sobic006G194600 Sobic006G159800 Sobic006G159800 Sobic008G186300--Sobic006G159800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.