Gene annotation
| Transcriptome id | Sobic.009G182400.1 |
|---|---|
| Synonym | EDL3 |
| Functional annotation | circadian clock coupling factor ZGT, putative, expressed |
| UniProt | A0A1B6P941 |
| Pfam | PF12937 |
| Panther DB | PTHR31348 PTHR31348:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT3G63060 : EID1-like 3 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g41490.1 : circadian clock coupling factor ZGT, putative, expressed |
| MaizeGDB (Corn) | Zm00025a027177 , Zm00025a044088 , Zm00025a037835 |
| Brachypodium | KQK05625 , KQK10200 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G231900 | early nodulin 20 precursor, putative, expressed | - |
| 2 | Sobic.009G161800 | protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 3 | Sobic.001G155300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed | K09840: 9-cis-epoxycarotenoid dioxygenase |
| 4 | Sobic.004G283550 | - | - |
| 5 | Sobic.003G422200 | recA protein, expressed | - |
| 6 | Sobic.004G309600 | ABA signaling component(PubMedID : 24151305)@"Central regulator in ABA signaling, biosynthesis, and drought resistance in rice"(PubMedID : 30367619)@bZIP transcription factor, putative, expressed | K14432: ABA responsive element binding factor |
| 7 | Sobic.009G064400 | cytochrome P450 71A1, putative, expressed | - |
| 8 | Sobic.003G064300 | - | - |
| 9 | Sobic.007G143100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
| 10 | Sobic.003G087100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.010G016500 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed | - |
| 12 | Sobic.009G076700 | expressed protein | - |
| 13 | Sobic.007G143200 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- | - |
| 14 | Sobic.004G170032 | - | - |
| 15 | Sobic.002G188700 | armadillo/beta-catenin repeat family protein, putative, expressed | - |
| 16 | Sobic.004G244100 | glycosyl transferase 8 domain containing protein, putative, expressed | - |
| 17 | Sobic.004G176900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.9 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 18 | Sobic.005G103600 | - | - |
| 19 | Sobic.002G021300 | bZIP transcription factor domain containing protein, expressed | - |
| 20 | Sobic.006G203000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed | K17893: AOX1, ubiquinol oxidase |
Gene co-expression network
Octagon: transcription factors
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