Gene annotation
| Transcriptome id | Sobic.008G087800.1 |
|---|---|
| Synonym | Sb08g009320 |
| Functional annotation | expressed protein |
| UniProt | A0A1B6PCB3 |
| Pfam | PF06749 |
| Panther DB | PTHR31769 PTHR31769:SF10 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G17210 : Protein of unknown function (DUF1218) |
|---|---|
| RAP-DB (Rice) | LOC_Os02g39510.1 : expressed protein |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G146500 | RGH1A, putative, expressed | - |
| 2 | Sobic.008G087500 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 3 | Sobic.002G038733 | - | - |
| 4 | Sobic.002G172000 | similar to Os09g0325700 protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 5 | Sobic.009G081700 | C4-dicarboxylate transporter/malic acid transport protein, expressed | - |
| 6 | Sobic.003G417500 | ZOS1-23 - C2H2 zinc finger protein, expressed | - |
| 7 | Sobic.005G062500 | - | - |
| 8 | Sobic.003G244100 | "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 9 | Sobic.004G101400 | Up-reguralion under drought(PubMedID : 24916767)@HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 10 | Sobic.010G129000 | aspartic proteinase nepenthesin-2 precursor, putative, expressed | - |
| 11 | Sobic.001G409400 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed | - |
| 12 | Sobic.006G104000 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 13 | Sobic.006G116801 | - | - |
| 14 | Sobic.004G043301 | - | - |
| 15 | Sobic.002G014500 | - | - |
| 16 | Sobic.001G424000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fringe-related protein, putative, expressed | - |
| 17 | Sobic.004G139100 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 18 | Sobic.001G307000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 19 | Sobic.005G121200 | "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
| 20 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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