Gene annotation
| Transcriptome id | Sobic.004G139100.2 |
|---|---|
| Synonym | Sb04g016960 |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) expressed protein |
| UniProt | A0A1Z5RMV3 |
| Pfam | - |
| Panther DB | - |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os02g26470.1 : expressed protein |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G109800 | Up-reguralion under drought(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 2 | Sobic.001G381700 | expressed protein | - |
| 3 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 4 | Sobic.009G006500 | integral membrane protein DUF6 containing protein, expressed | - |
| 5 | Sobic.001G200700 | expressed protein | - |
| 6 | Sobic.001G409400 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed | - |
| 7 | Sobic.004G108100 | Ca exchanger(PubMedID : 22196357)@calcium-binding EF hand family protein, putative, expressed | - |
| 8 | Sobic.009G015500 | - | - |
| 9 | Sobic.001G452200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Caleosin-related family protein("PubMedID : 26759170,PubMedID : 24597475")@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 10 | Sobic.004G308300 | xyloglucan fucosyltransferase, putative, expressed | K13681: xyloglucan fucosyltransferase |
| 11 | Sobic.003G194400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 12 | Sobic.002G141800 | expressed protein | - |
| 13 | Sobic.002G416500 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 14 | Sobic.004G101400 | Up-reguralion under drought(PubMedID : 24916767)@HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 15 | Sobic.003G236551 | - | - |
| 16 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 17 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 18 | Sobic.005G062500 | - | - |
| 19 | Sobic.001G385900 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@stress responsive protein, putative, expressed | - |
| 20 | Sobic.006G181900 | aluminum-activated malate transporter, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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