Gene annotation
Transcriptome id Sobic.002G038733.1
Synonym -
Functional annotation -
UniProt A0A1W0W264
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF90
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G06490 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os07g06560.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045049 , Zm00025a016617
Brachypodium KQK12841
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G186300 receptor-like protein kinase HAIKU2 precursor, putative, expressed -
2 Sobic.002G172000 similar to Os09g0325700 protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
3 Sobic.008G040900 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
4 Sobic.001G460300 expressed protein -
5 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -
6 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
7 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
8 Sobic.004G219700 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
9 Sobic.005G061000 ABC-2 type transporter domain containing protein, expressed -
10 Sobic.003G417500 ZOS1-23 - C2H2 zinc finger protein, expressed -
11 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
12 Sobic.004G045800 phytosulfokine receptor precursor, putative, expressed -
13 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.010G245900 - -
15 Sobic.008G087800 expressed protein -
16 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
17 Sobic.001G479850 - -
18 Sobic.003G444900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ankyrin repeat domain-containing protein 28, putative, expressed -
19 Sobic.010G231900 early nodulin 20 precursor, putative, expressed -
20 Sobic.005G110487 - -


Gene co-expression network
sample Sobic002G038733 Sobic002G038733 Sobic008G186300 Sobic008G186300 Sobic002G038733--Sobic008G186300 Sobic002G172000 Sobic002G172000 Sobic002G038733--Sobic002G172000 Sobic008G040900 Sobic008G040900 Sobic002G038733--Sobic008G040900 Sobic001G460300 Sobic001G460300 Sobic002G038733--Sobic001G460300 Sobic006G194600 Sobic006G194600 Sobic002G038733--Sobic006G194600 Sobic005G121200 Sobic005G121200 Sobic002G038733--Sobic005G121200 Sobic003G278700 Sobic003G278700 Sobic002G038733--Sobic003G278700 Sobic004G219700 Sobic004G219700 Sobic002G038733--Sobic004G219700 Sobic005G061000 Sobic005G061000 Sobic002G038733--Sobic005G061000 Sobic008G186300--Sobic002G038733 Sobic008G186300--Sobic008G040900 Sobic003G417500 Sobic003G417500 Sobic008G186300--Sobic003G417500 Sobic009G030200 Sobic009G030200 Sobic008G186300--Sobic009G030200 Sobic004G045800 Sobic004G045800 Sobic008G186300--Sobic004G045800 Sobic003G227600 Sobic003G227600 Sobic008G186300--Sobic003G227600 Sobic004G172100 Sobic004G172100 Sobic008G186300--Sobic004G172100 Sobic008G186300--Sobic006G194600 Sobic006G159800 Sobic006G159800 Sobic008G186300--Sobic006G159800 Sobic002G172000--Sobic002G038733 Sobic002G172000--Sobic004G219700 Sobic010G231900 Sobic010G231900 Sobic002G172000--Sobic010G231900 Sobic007G013800 Sobic007G013800 Sobic002G172000--Sobic007G013800 Sobic010G245900 Sobic010G245900 Sobic002G172000--Sobic010G245900 Sobic010G146500 Sobic010G146500 Sobic002G172000--Sobic010G146500 Sobic008G087500 Sobic008G087500 Sobic002G172000--Sobic008G087500 Sobic008G087800 Sobic008G087800 Sobic002G172000--Sobic008G087800 Sobic002G172000--Sobic008G186300 Sobic008G040900--Sobic006G194600 Sobic001G075101 Sobic001G075101 Sobic008G040900--Sobic001G075101 Sobic006G203000 Sobic006G203000 Sobic008G040900--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic008G040900--Sobic002G037400 Sobic007G169600 Sobic007G169600 Sobic008G040900--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic008G040900--Sobic003G083000 Sobic006G026400 Sobic006G026400 Sobic008G040900--Sobic006G026400 Sobic005G016900 Sobic005G016900 Sobic008G040900--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic008G040900--Sobic007G143100 Sobic001G460300--Sobic003G278700 Sobic003G032900 Sobic003G032900 Sobic001G460300--Sobic003G032900 Sobic009G099000 Sobic009G099000 Sobic001G460300--Sobic009G099000 Sobic001G460300--Sobic005G121200 Sobic001G157400 Sobic001G157400 Sobic001G460300--Sobic001G157400 Sobic001G460300--Sobic003G227600 Sobic002G337800 Sobic002G337800 Sobic001G460300--Sobic002G337800 Sobic009G216900 Sobic009G216900 Sobic001G460300--Sobic009G216900 Sobic002G325900 Sobic002G325900 Sobic001G460300--Sobic002G325900 Sobic004G244300 Sobic004G244300 Sobic006G194600--Sobic004G244300 Sobic006G194600--Sobic006G026400 Sobic004G244100 Sobic004G244100 Sobic006G194600--Sobic004G244100 Sobic010G016500 Sobic010G016500 Sobic006G194600--Sobic010G016500 Sobic004G281200 Sobic004G281200 Sobic006G194600--Sobic004G281200 Sobic006G194600--Sobic006G203000 Sobic009G167000 Sobic009G167000 Sobic006G194600--Sobic009G167000 Sobic006G194600--Sobic002G037400 Sobic008G059000 Sobic008G059000 Sobic006G194600--Sobic008G059000 Sobic001G127800 Sobic001G127800 Sobic005G121200--Sobic001G127800 Sobic005G121200--Sobic001G460300 Sobic005G121200--Sobic002G337800 Sobic005G121200--Sobic003G278700 Sobic005G121200--Sobic009G030200 Sobic001G396400 Sobic001G396400 Sobic005G121200--Sobic001G396400 Sobic003G198200 Sobic003G198200 Sobic005G121200--Sobic003G198200 Sobic007G152800 Sobic007G152800 Sobic005G121200--Sobic007G152800 Sobic003G198150 Sobic003G198150 Sobic005G121200--Sobic003G198150 Sobic003G278700--Sobic009G099000 Sobic003G278700--Sobic001G157400 Sobic003G278700--Sobic001G460300 Sobic001G050800 Sobic001G050800 Sobic003G278700--Sobic001G050800 Sobic005G231700 Sobic005G231700 Sobic003G278700--Sobic005G231700 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic001G063600 Sobic001G063600 Sobic003G278700--Sobic001G063600 Sobic003G278700--Sobic003G227600 Sobic004G219700--Sobic010G245900 Sobic003G397400 Sobic003G397400 Sobic004G219700--Sobic003G397400 Sobic007G073750 Sobic007G073750 Sobic004G219700--Sobic007G073750 Sobic003G137900 Sobic003G137900 Sobic004G219700--Sobic003G137900 Sobic006G272700 Sobic006G272700 Sobic004G219700--Sobic006G272700 Sobic010G253500 Sobic010G253500 Sobic004G219700--Sobic010G253500 Sobic001G210250 Sobic001G210250 Sobic004G219700--Sobic001G210250 Sobic004G219700--Sobic003G083000 Sobic004G219700--Sobic005G016900 Sobic005G061033 Sobic005G061033 Sobic005G061000--Sobic005G061033 Sobic005G061000--Sobic002G037400 Sobic005G061000--Sobic007G143100 Sobic001G155300 Sobic001G155300 Sobic005G061000--Sobic001G155300 Sobic005G061000--Sobic005G016900 Sobic005G061000--Sobic003G397400 Sobic005G061000--Sobic007G169600 Sobic007G143200 Sobic007G143200 Sobic005G061000--Sobic007G143200 Sobic002G325600 Sobic002G325600 Sobic005G061000--Sobic002G325600
Octagon: transcription factors


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