Gene annotation
Transcriptome id Sobic.003G368300.1
Synonym Sb03g040970, GBF4
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
bZIP transcription factor domain containing protein, expressed
UniProt C5XQN2
Pfam PF00170
Panther DB PTHR22952 PTHR22952:SF175
NCBI CDD -
KEGG Orthology K14432; ABA responsive element binding factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G03970 : G-box binding factor 4
RAP-DB (Rice) LOC_Os01g64730.1 : bZIP transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039561 , Zm00025a026704
Brachypodium KQK10771
Barley HORVU3Hr1G083250.6 , HORVU3Hr1G083250.3 , HORVU3Hr1G083250.4 , HORVU3Hr1G083250.5 , HORVU3Hr1G083250.2 , HORVU3Hr1G083250.7
Wheat TraesCS3D02G371900 , TraesCS3D02G371900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G368300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G029800 UDP-arabinose 4-epimerase 1, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
2 Sobic.002G172000 similar to Os09g0325700 protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
3 Sobic.006G116801 - -
4 Sobic.008G186300 receptor-like protein kinase HAIKU2 precursor, putative, expressed -
5 Sobic.010G146500 RGH1A, putative, expressed -
6 Sobic.008G087500 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
7 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
8 Sobic.003G224200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
9 Sobic.004G256800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid transporter, putative, expressed -
10 Sobic.005G061033 - -
11 Sobic.002G038733 - -
12 Sobic.002G020900 GCRP5 - Glycine and cysteine rich family protein precursor, expressed -
13 Sobic.005G061000 ABC-2 type transporter domain containing protein, expressed -
14 Sobic.001G237000 lectin-like receptor kinase, putative, expressed -
15 Sobic.006G119600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@GRAM and C2 domains containing protein, putative, expressed -
16 Sobic.008G087400 - -
17 Sobic.003G259800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.001G307000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G070401 - -
20 Sobic.003G019800 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic003G368300 Sobic003G368300 Sobic002G029800 Sobic002G029800 Sobic003G368300--Sobic002G029800 Sobic002G172000 Sobic002G172000 Sobic003G368300--Sobic002G172000 Sobic006G116801 Sobic006G116801 Sobic003G368300--Sobic006G116801 Sobic008G186300 Sobic008G186300 Sobic003G368300--Sobic008G186300 Sobic010G146500 Sobic010G146500 Sobic003G368300--Sobic010G146500 Sobic008G087500 Sobic008G087500 Sobic003G368300--Sobic008G087500 Sobic005G121200 Sobic005G121200 Sobic003G368300--Sobic005G121200 Sobic003G224200 Sobic003G224200 Sobic003G368300--Sobic003G224200 Sobic004G256800 Sobic004G256800 Sobic003G368300--Sobic004G256800 Sobic001G206300 Sobic001G206300 Sobic002G029800--Sobic001G206300 Sobic002G029800--Sobic003G368300 Sobic004G250900 Sobic004G250900 Sobic002G029800--Sobic004G250900 Sobic003G129400 Sobic003G129400 Sobic002G029800--Sobic003G129400 Sobic003G320900 Sobic003G320900 Sobic002G029800--Sobic003G320900 Sobic006G096300 Sobic006G096300 Sobic002G029800--Sobic006G096300 Sobic003G189700 Sobic003G189700 Sobic002G029800--Sobic003G189700 Sobic002G029800--Sobic004G256800 Sobic001G218200 Sobic001G218200 Sobic002G029800--Sobic001G218200 Sobic002G038733 Sobic002G038733 Sobic002G172000--Sobic002G038733 Sobic004G219700 Sobic004G219700 Sobic002G172000--Sobic004G219700 Sobic010G231900 Sobic010G231900 Sobic002G172000--Sobic010G231900 Sobic007G013800 Sobic007G013800 Sobic002G172000--Sobic007G013800 Sobic010G245900 Sobic010G245900 Sobic002G172000--Sobic010G245900 Sobic002G172000--Sobic010G146500 Sobic002G172000--Sobic008G087500 Sobic008G087800 Sobic008G087800 Sobic002G172000--Sobic008G087800 Sobic002G172000--Sobic008G186300 Sobic003G244100 Sobic003G244100 Sobic006G116801--Sobic003G244100 Sobic001G409400 Sobic001G409400 Sobic006G116801--Sobic001G409400 Sobic006G104000 Sobic006G104000 Sobic006G116801--Sobic006G104000 Sobic009G046200 Sobic009G046200 Sobic006G116801--Sobic009G046200 Sobic006G116801--Sobic008G087500 Sobic002G097000 Sobic002G097000 Sobic006G116801--Sobic002G097000 Sobic006G116801--Sobic010G146500 Sobic001G424000 Sobic001G424000 Sobic006G116801--Sobic001G424000 Sobic005G082860 Sobic005G082860 Sobic006G116801--Sobic005G082860 Sobic008G186300--Sobic002G038733 Sobic008G040900 Sobic008G040900 Sobic008G186300--Sobic008G040900 Sobic003G417500 Sobic003G417500 Sobic008G186300--Sobic003G417500 Sobic009G030200 Sobic009G030200 Sobic008G186300--Sobic009G030200 Sobic004G045800 Sobic004G045800 Sobic008G186300--Sobic004G045800 Sobic003G227600 Sobic003G227600 Sobic008G186300--Sobic003G227600 Sobic004G172100 Sobic004G172100 Sobic008G186300--Sobic004G172100 Sobic006G194600 Sobic006G194600 Sobic008G186300--Sobic006G194600 Sobic006G159800 Sobic006G159800 Sobic008G186300--Sobic006G159800 Sobic010G146500--Sobic008G087500 Sobic004G101400 Sobic004G101400 Sobic010G146500--Sobic004G101400 Sobic010G146500--Sobic006G116801 Sobic010G146500--Sobic006G104000 Sobic001G027800 Sobic001G027800 Sobic010G146500--Sobic001G027800 Sobic001G354800 Sobic001G354800 Sobic010G146500--Sobic001G354800 Sobic001G307000 Sobic001G307000 Sobic010G146500--Sobic001G307000 Sobic010G146500--Sobic008G087800 Sobic010G146500--Sobic003G244100 Sobic008G087500--Sobic010G146500 Sobic008G087500--Sobic003G244100 Sobic002G164960 Sobic002G164960 Sobic008G087500--Sobic002G164960 Sobic008G087500--Sobic006G116801 Sobic008G087500--Sobic001G424000 Sobic008G087500--Sobic001G409400 Sobic002G075800 Sobic002G075800 Sobic008G087500--Sobic002G075800 Sobic008G087500--Sobic004G101400 Sobic008G087500--Sobic008G087800 Sobic001G127800 Sobic001G127800 Sobic005G121200--Sobic001G127800 Sobic001G460300 Sobic001G460300 Sobic005G121200--Sobic001G460300 Sobic002G337800 Sobic002G337800 Sobic005G121200--Sobic002G337800 Sobic003G278700 Sobic003G278700 Sobic005G121200--Sobic003G278700 Sobic005G121200--Sobic009G030200 Sobic001G396400 Sobic001G396400 Sobic005G121200--Sobic001G396400 Sobic003G198200 Sobic003G198200 Sobic005G121200--Sobic003G198200 Sobic007G152800 Sobic007G152800 Sobic005G121200--Sobic007G152800 Sobic003G198150 Sobic003G198150 Sobic005G121200--Sobic003G198150 Sobic006G119600 Sobic006G119600 Sobic003G224200--Sobic006G119600 Sobic003G281600 Sobic003G281600 Sobic003G224200--Sobic003G281600 Sobic009G238600 Sobic009G238600 Sobic003G224200--Sobic009G238600 Sobic005G061033 Sobic005G061033 Sobic003G224200--Sobic005G061033 Sobic005G061000 Sobic005G061000 Sobic003G224200--Sobic005G061000 Sobic003G197300 Sobic003G197300 Sobic003G224200--Sobic003G197300 Sobic003G224200--Sobic010G146500 Sobic003G224200--Sobic001G027800 Sobic010G114300 Sobic010G114300 Sobic003G224200--Sobic010G114300 Sobic004G256800--Sobic005G061033 Sobic001G082500 Sobic001G082500 Sobic004G256800--Sobic001G082500 Sobic004G256800--Sobic001G206300 Sobic003G086500 Sobic003G086500 Sobic004G256800--Sobic003G086500 Sobic004G256800--Sobic003G224200 Sobic003G289900 Sobic003G289900 Sobic004G256800--Sobic003G289900 Sobic004G256800--Sobic003G197300 Sobic003G036700 Sobic003G036700 Sobic004G256800--Sobic003G036700 Sobic001G379000 Sobic001G379000 Sobic004G256800--Sobic001G379000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.