Gene annotation
Transcriptome id Sobic.002G029800.1
Synonym MUR4, HSR8, Sb02g002660, UXE1
Functional annotation UDP-arabinose 4-epimerase 1, putative, expressed
UniProt C5X9F4
Pfam PF01073
Panther DB PTHR10366 PTHR10366:SF326
NCBI CDD -
KEGG Orthology K12448; UXE, UDP-arabinose 4-epimerase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT1G30620 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os07g04690.2 : UDP-arabinose 4-epimerase 1, putative, expressed
MaizeGDB (Corn) Zm00025a009754
Brachypodium KQK21001
Barley HORVU5Hr1G077110.3 , HORVU5Hr1G077110.2 , HORVU5Hr1G077110.1 , HORVU5Hr1G077110.6 , HORVU5Hr1G077110.5 , HORVU5Hr1G077110.4
Wheat TraesCS5A02G291300 , TraesCS5D02G298700 , TraesCS5B02G290300 , TraesCS5B02G290300
Populus -


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cDNA sequences
Sobic.002G029800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206300 dof zinc finger domain containing protein, putative, expressed -
2 Sobic.003G368300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed K14432: ABA responsive element binding factor
3 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
4 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
5 Sobic.003G320900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.003G189700 thioredoxin, putative, expressed -
8 Sobic.004G256800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid transporter, putative, expressed -
9 Sobic.001G218200 expressed protein -
10 Sobic.002G236200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transcription factor BIM2, putative, expressed -
11 Sobic.001G418400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@cadmium tolerance factor, putative, expressed -
12 Sobic.002G121000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G082600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
14 Sobic.006G208800 YT521-B, putative, expressed -
15 Sobic.007G097700 DUF593 domain containing protein, expressed -
16 Sobic.006G160000 leucine-rich repeat family protein, putative, expressed -
17 Sobic.001G230900 - K07910: Ras-related protein Rab-18
18 Sobic.006G107400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
19 Sobic.001G294600 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
20 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G029800 Sobic002G029800 Sobic001G206300 Sobic001G206300 Sobic002G029800--Sobic001G206300 Sobic003G368300 Sobic003G368300 Sobic002G029800--Sobic003G368300 Sobic004G250900 Sobic004G250900 Sobic002G029800--Sobic004G250900 Sobic003G129400 Sobic003G129400 Sobic002G029800--Sobic003G129400 Sobic003G320900 Sobic003G320900 Sobic002G029800--Sobic003G320900 Sobic006G096300 Sobic006G096300 Sobic002G029800--Sobic006G096300 Sobic003G189700 Sobic003G189700 Sobic002G029800--Sobic003G189700 Sobic004G256800 Sobic004G256800 Sobic002G029800--Sobic004G256800 Sobic001G218200 Sobic001G218200 Sobic002G029800--Sobic001G218200 Sobic003G197300 Sobic003G197300 Sobic001G206300--Sobic003G197300 Sobic001G379000 Sobic001G379000 Sobic001G206300--Sobic001G379000 Sobic007G034600 Sobic007G034600 Sobic001G206300--Sobic007G034600 Sobic003G436500 Sobic003G436500 Sobic001G206300--Sobic003G436500 Sobic003G358200 Sobic003G358200 Sobic001G206300--Sobic003G358200 Sobic001G206300--Sobic006G096300 Sobic001G206300--Sobic003G129400 Sobic006G164000 Sobic006G164000 Sobic001G206300--Sobic006G164000 Sobic002G400400 Sobic002G400400 Sobic001G206300--Sobic002G400400 Sobic003G368300--Sobic002G029800 Sobic002G172000 Sobic002G172000 Sobic003G368300--Sobic002G172000 Sobic006G116801 Sobic006G116801 Sobic003G368300--Sobic006G116801 Sobic008G186300 Sobic008G186300 Sobic003G368300--Sobic008G186300 Sobic010G146500 Sobic010G146500 Sobic003G368300--Sobic010G146500 Sobic008G087500 Sobic008G087500 Sobic003G368300--Sobic008G087500 Sobic005G121200 Sobic005G121200 Sobic003G368300--Sobic005G121200 Sobic003G224200 Sobic003G224200 Sobic003G368300--Sobic003G224200 Sobic003G368300--Sobic004G256800 Sobic004G028800 Sobic004G028800 Sobic004G250900--Sobic004G028800 Sobic001G488200 Sobic001G488200 Sobic004G250900--Sobic001G488200 Sobic007G097700 Sobic007G097700 Sobic004G250900--Sobic007G097700 Sobic004G345100 Sobic004G345100 Sobic004G250900--Sobic004G345100 Sobic002G276900 Sobic002G276900 Sobic004G250900--Sobic002G276900 Sobic004G256200 Sobic004G256200 Sobic004G250900--Sobic004G256200 Sobic004G250900--Sobic006G096300 Sobic009G025100 Sobic009G025100 Sobic004G250900--Sobic009G025100 Sobic009G009800 Sobic009G009800 Sobic004G250900--Sobic009G009800 Sobic003G342600 Sobic003G342600 Sobic003G129400--Sobic003G342600 Sobic010G071700 Sobic010G071700 Sobic003G129400--Sobic010G071700 Sobic001G063600 Sobic001G063600 Sobic003G129400--Sobic001G063600 Sobic003G129400--Sobic001G379000 Sobic007G180300 Sobic007G180300 Sobic003G129400--Sobic007G180300 Sobic009G030200 Sobic009G030200 Sobic003G129400--Sobic009G030200 Sobic005G231700 Sobic005G231700 Sobic003G129400--Sobic005G231700 Sobic002G185300 Sobic002G185300 Sobic003G129400--Sobic002G185300 Sobic001G403600 Sobic001G403600 Sobic003G129400--Sobic001G403600 Sobic002G270700 Sobic002G270700 Sobic003G320900--Sobic002G270700 Sobic003G031200 Sobic003G031200 Sobic003G320900--Sobic003G031200 Sobic003G320900--Sobic006G096300 Sobic002G123900 Sobic002G123900 Sobic003G320900--Sobic002G123900 Sobic008G058700 Sobic008G058700 Sobic003G320900--Sobic008G058700 Sobic002G121000 Sobic002G121000 Sobic003G320900--Sobic002G121000 Sobic003G126800 Sobic003G126800 Sobic003G320900--Sobic003G126800 Sobic009G160200 Sobic009G160200 Sobic003G320900--Sobic009G160200 Sobic003G320900--Sobic003G189700 Sobic006G096300--Sobic007G034600 Sobic004G067900 Sobic004G067900 Sobic006G096300--Sobic004G067900 Sobic001G106400 Sobic001G106400 Sobic006G096300--Sobic001G106400 Sobic002G359900 Sobic002G359900 Sobic006G096300--Sobic002G359900 Sobic004G102900 Sobic004G102900 Sobic006G096300--Sobic004G102900 Sobic006G096300--Sobic001G488200 Sobic006G096300--Sobic004G028800 Sobic006G096300--Sobic003G031200 Sobic006G096300--Sobic004G250900 Sobic010G017000 Sobic010G017000 Sobic003G189700--Sobic010G017000 Sobic004G083000 Sobic004G083000 Sobic003G189700--Sobic004G083000 Sobic003G189700--Sobic009G160200 Sobic006G217700 Sobic006G217700 Sobic003G189700--Sobic006G217700 Sobic002G236200 Sobic002G236200 Sobic003G189700--Sobic002G236200 Sobic002G395600 Sobic002G395600 Sobic003G189700--Sobic002G395600 Sobic003G189700--Sobic002G121000 Sobic003G038600 Sobic003G038600 Sobic003G189700--Sobic003G038600 Sobic010G238700 Sobic010G238700 Sobic003G189700--Sobic010G238700 Sobic005G061033 Sobic005G061033 Sobic004G256800--Sobic005G061033 Sobic001G082500 Sobic001G082500 Sobic004G256800--Sobic001G082500 Sobic004G256800--Sobic001G206300 Sobic003G086500 Sobic003G086500 Sobic004G256800--Sobic003G086500 Sobic004G256800--Sobic003G224200 Sobic003G289900 Sobic003G289900 Sobic004G256800--Sobic003G289900 Sobic004G256800--Sobic003G197300 Sobic003G036700 Sobic003G036700 Sobic004G256800--Sobic003G036700 Sobic004G256800--Sobic001G379000 Sobic001G116100 Sobic001G116100 Sobic001G218200--Sobic001G116100 Sobic006G261100 Sobic006G261100 Sobic001G218200--Sobic006G261100 Sobic005G180800 Sobic005G180800 Sobic001G218200--Sobic005G180800 Sobic002G362300 Sobic002G362300 Sobic001G218200--Sobic002G362300 Sobic002G103700 Sobic002G103700 Sobic001G218200--Sobic002G103700 Sobic001G218200--Sobic004G256200 Sobic005G030300 Sobic005G030300 Sobic001G218200--Sobic005G030300 Sobic002G347700 Sobic002G347700 Sobic001G218200--Sobic002G347700 Sobic007G155900 Sobic007G155900 Sobic001G218200--Sobic007G155900
Octagon: transcription factors


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