Gene annotation
Transcriptome id Sobic.003G320900.1,Sobic.003G320900.2
Synonym Sb03g036766
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0W016 , A0A1B6Q6I8
Pfam -
Panther DB PTHR34064 PTHR34064:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g57740.1 : expressed protein
MaizeGDB (Corn) Zm00025a039873
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G320900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G270700 OsRhmbd16 - Putative Rhomboid homologue, expressed -
2 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
3 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.002G123900 OsFBX187 - F-box domain containing protein, expressed -
5 Sobic.008G058700 metal cation transporter, putative, expressed -
6 Sobic.002G121000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G126800 cysteine proteinase inhibitor precursor protein, putative, expressed -
8 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
9 Sobic.003G189700 thioredoxin, putative, expressed -
10 Sobic.008G111700 expressed protein -
11 Sobic.010G050900 harpin-induced protein, putative, expressed -
12 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
13 Sobic.003G252900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
14 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
15 Sobic.007G216500 expressed protein -
16 Sobic.005G187500 GRF-interacting factor 2, putative, expressed -
17 Sobic.004G272200 secretory carrier-associated membrane protein, putative, expressed -
18 Sobic.003G033700 expressed protein K15326: tRNA-splicing endonuclease subunit Sen54
19 Sobic.003G052400 proline-rich family protein, putative, expressed -
20 Sobic.001G218200 expressed protein -


Gene co-expression network
sample Sobic003G320900 Sobic003G320900 Sobic002G270700 Sobic002G270700 Sobic003G320900--Sobic002G270700 Sobic003G031200 Sobic003G031200 Sobic003G320900--Sobic003G031200 Sobic006G096300 Sobic006G096300 Sobic003G320900--Sobic006G096300 Sobic002G123900 Sobic002G123900 Sobic003G320900--Sobic002G123900 Sobic008G058700 Sobic008G058700 Sobic003G320900--Sobic008G058700 Sobic002G121000 Sobic002G121000 Sobic003G320900--Sobic002G121000 Sobic003G126800 Sobic003G126800 Sobic003G320900--Sobic003G126800 Sobic009G160200 Sobic009G160200 Sobic003G320900--Sobic009G160200 Sobic003G189700 Sobic003G189700 Sobic003G320900--Sobic003G189700 Sobic004G273200 Sobic004G273200 Sobic002G270700--Sobic004G273200 Sobic003G392200 Sobic003G392200 Sobic002G270700--Sobic003G392200 Sobic001G525400 Sobic001G525400 Sobic002G270700--Sobic001G525400 Sobic003G338900 Sobic003G338900 Sobic002G270700--Sobic003G338900 Sobic006G267700 Sobic006G267700 Sobic002G270700--Sobic006G267700 Sobic002G330300 Sobic002G330300 Sobic002G270700--Sobic002G330300 Sobic007G178200 Sobic007G178200 Sobic002G270700--Sobic007G178200 Sobic006G263100 Sobic006G263100 Sobic002G270700--Sobic006G263100 Sobic002G197600 Sobic002G197600 Sobic002G270700--Sobic002G197600 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic002G359900 Sobic002G359900 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic002G129200 Sobic002G129200 Sobic003G031200--Sobic002G129200 Sobic002G044000 Sobic002G044000 Sobic003G031200--Sobic002G044000 Sobic003G043400 Sobic003G043400 Sobic003G031200--Sobic003G043400 Sobic001G402600 Sobic001G402600 Sobic003G031200--Sobic001G402600 Sobic001G285300 Sobic001G285300 Sobic003G031200--Sobic001G285300 Sobic007G034600 Sobic007G034600 Sobic006G096300--Sobic007G034600 Sobic004G067900 Sobic004G067900 Sobic006G096300--Sobic004G067900 Sobic001G106400 Sobic001G106400 Sobic006G096300--Sobic001G106400 Sobic006G096300--Sobic002G359900 Sobic004G102900 Sobic004G102900 Sobic006G096300--Sobic004G102900 Sobic001G488200 Sobic001G488200 Sobic006G096300--Sobic001G488200 Sobic004G028800 Sobic004G028800 Sobic006G096300--Sobic004G028800 Sobic006G096300--Sobic003G031200 Sobic004G250900 Sobic004G250900 Sobic006G096300--Sobic004G250900 Sobic002G103700 Sobic002G103700 Sobic002G123900--Sobic002G103700 Sobic006G164000 Sobic006G164000 Sobic002G123900--Sobic006G164000 Sobic002G123900--Sobic004G250900 Sobic002G123900--Sobic003G320900 Sobic002G123900--Sobic003G031200 Sobic005G084900 Sobic005G084900 Sobic002G123900--Sobic005G084900 Sobic003G436500 Sobic003G436500 Sobic002G123900--Sobic003G436500 Sobic005G180800 Sobic005G180800 Sobic002G123900--Sobic005G180800 Sobic002G400400 Sobic002G400400 Sobic002G123900--Sobic002G400400 Sobic003G410400 Sobic003G410400 Sobic008G058700--Sobic003G410400 Sobic004G083000 Sobic004G083000 Sobic008G058700--Sobic004G083000 Sobic008G058700--Sobic003G126800 Sobic003G252900 Sobic003G252900 Sobic008G058700--Sobic003G252900 Sobic009G070200 Sobic009G070200 Sobic008G058700--Sobic009G070200 Sobic008G058700--Sobic003G043400 Sobic008G058700--Sobic002G044000 Sobic003G358300 Sobic003G358300 Sobic008G058700--Sobic003G358300 Sobic008G058700--Sobic009G160200 Sobic007G038800 Sobic007G038800 Sobic002G121000--Sobic007G038800 Sobic009G034400 Sobic009G034400 Sobic002G121000--Sobic009G034400 Sobic009G036900 Sobic009G036900 Sobic002G121000--Sobic009G036900 Sobic002G276900 Sobic002G276900 Sobic002G121000--Sobic002G276900 Sobic002G068300 Sobic002G068300 Sobic002G121000--Sobic002G068300 Sobic004G122000 Sobic004G122000 Sobic002G121000--Sobic004G122000 Sobic001G230900 Sobic001G230900 Sobic002G121000--Sobic001G230900 Sobic003G416600 Sobic003G416600 Sobic002G121000--Sobic003G416600 Sobic001G424500 Sobic001G424500 Sobic002G121000--Sobic001G424500 Sobic003G126800--Sobic008G058700 Sobic003G126800--Sobic003G252900 Sobic003G126800--Sobic010G088300 Sobic003G126800--Sobic003G031200 Sobic003G126800--Sobic009G070200 Sobic004G297300 Sobic004G297300 Sobic003G126800--Sobic004G297300 Sobic003G126800--Sobic003G358300 Sobic001G066700 Sobic001G066700 Sobic003G126800--Sobic001G066700 Sobic003G039200 Sobic003G039200 Sobic003G126800--Sobic003G039200 Sobic001G283500 Sobic001G283500 Sobic009G160200--Sobic001G283500 Sobic006G222400 Sobic006G222400 Sobic009G160200--Sobic006G222400 Sobic001G311100 Sobic001G311100 Sobic009G160200--Sobic001G311100 Sobic010G017000 Sobic010G017000 Sobic009G160200--Sobic010G017000 Sobic003G217100 Sobic003G217100 Sobic009G160200--Sobic003G217100 Sobic002G261900 Sobic002G261900 Sobic009G160200--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic009G160200--Sobic010G094600 Sobic009G160200--Sobic003G043400 Sobic003G052400 Sobic003G052400 Sobic009G160200--Sobic003G052400 Sobic003G189700--Sobic010G017000 Sobic003G189700--Sobic004G083000 Sobic003G189700--Sobic009G160200 Sobic006G217700 Sobic006G217700 Sobic003G189700--Sobic006G217700 Sobic002G236200 Sobic002G236200 Sobic003G189700--Sobic002G236200 Sobic002G395600 Sobic002G395600 Sobic003G189700--Sobic002G395600 Sobic003G189700--Sobic002G121000 Sobic003G038600 Sobic003G038600 Sobic003G189700--Sobic003G038600 Sobic010G238700 Sobic010G238700 Sobic003G189700--Sobic010G238700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.