Gene annotation
Transcriptome id Sobic.009G054450.1
Synonym -
Functional annotation -
UniProt A0A1B6P6P4
Pfam PF13456
Panther DB PTHR33033 PTHR33033:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G09775 : -
RAP-DB (Rice) LOC_Os02g06215.1 : RNA-directed DNA polymerase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G204300 cyclin, putative, expressed K06627: cyclin-A
2 Sobic.004G219700 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
3 Sobic.002G172000 similar to Os09g0325700 protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
4 Sobic.003G417500 ZOS1-23 - C2H2 zinc finger protein, expressed -
5 Sobic.002G379932 - -
6 Sobic.001G324200 - -
7 Sobic.001G060600 cell division control protein 2 homolog 3, putative, expressed K08818: cell division cycle 2-like
8 Sobic.010G022350 - -
9 Sobic.003G357900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@strictosidine synthase, putative, expressed -
10 Sobic.003G406180 - -
11 Sobic.003G348700 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.010G245900 - -
13 Sobic.004G067050 - -
14 Sobic.003G444900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ankyrin repeat domain-containing protein 28, putative, expressed -
15 Sobic.002G198400 CYC/tb1-like (ClassII) Subclade 20 TCP(PubMedID : 21444336)@-(PubMedID : 23108465)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
16 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
17 Sobic.003G267100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
18 Sobic.006G239900 Cf-4A protein, putative, expressed -
19 Sobic.010G247600 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
20 Sobic.003G327300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic009G054450 Sobic009G054450 Sobic004G204300 Sobic004G204300 Sobic009G054450--Sobic004G204300 Sobic004G219700 Sobic004G219700 Sobic009G054450--Sobic004G219700 Sobic002G172000 Sobic002G172000 Sobic009G054450--Sobic002G172000 Sobic003G417500 Sobic003G417500 Sobic009G054450--Sobic003G417500 Sobic002G379932 Sobic002G379932 Sobic009G054450--Sobic002G379932 Sobic001G324200 Sobic001G324200 Sobic009G054450--Sobic001G324200 Sobic001G060600 Sobic001G060600 Sobic009G054450--Sobic001G060600 Sobic010G022350 Sobic010G022350 Sobic009G054450--Sobic010G022350 Sobic003G357900 Sobic003G357900 Sobic009G054450--Sobic003G357900 Sobic001G138700 Sobic001G138700 Sobic004G204300--Sobic001G138700 Sobic010G023066 Sobic010G023066 Sobic004G204300--Sobic010G023066 Sobic005G071500 Sobic005G071500 Sobic004G204300--Sobic005G071500 Sobic004G204300--Sobic003G417500 Sobic006G217950 Sobic006G217950 Sobic004G204300--Sobic006G217950 Sobic009G200750 Sobic009G200750 Sobic004G204300--Sobic009G200750 Sobic004G204300--Sobic010G022350 Sobic002G050450 Sobic002G050450 Sobic004G204300--Sobic002G050450 Sobic001G216900 Sobic001G216900 Sobic004G204300--Sobic001G216900 Sobic010G245900 Sobic010G245900 Sobic004G219700--Sobic010G245900 Sobic003G397400 Sobic003G397400 Sobic004G219700--Sobic003G397400 Sobic007G073750 Sobic007G073750 Sobic004G219700--Sobic007G073750 Sobic003G137900 Sobic003G137900 Sobic004G219700--Sobic003G137900 Sobic006G272700 Sobic006G272700 Sobic004G219700--Sobic006G272700 Sobic010G253500 Sobic010G253500 Sobic004G219700--Sobic010G253500 Sobic001G210250 Sobic001G210250 Sobic004G219700--Sobic001G210250 Sobic003G083000 Sobic003G083000 Sobic004G219700--Sobic003G083000 Sobic005G016900 Sobic005G016900 Sobic004G219700--Sobic005G016900 Sobic002G038733 Sobic002G038733 Sobic002G172000--Sobic002G038733 Sobic002G172000--Sobic004G219700 Sobic010G231900 Sobic010G231900 Sobic002G172000--Sobic010G231900 Sobic007G013800 Sobic007G013800 Sobic002G172000--Sobic007G013800 Sobic002G172000--Sobic010G245900 Sobic010G146500 Sobic010G146500 Sobic002G172000--Sobic010G146500 Sobic008G087500 Sobic008G087500 Sobic002G172000--Sobic008G087500 Sobic008G087800 Sobic008G087800 Sobic002G172000--Sobic008G087800 Sobic008G186300 Sobic008G186300 Sobic002G172000--Sobic008G186300 Sobic003G417500--Sobic005G071500 Sobic003G417500--Sobic010G023066 Sobic003G417500--Sobic004G204300 Sobic003G417500--Sobic001G216900 Sobic003G417500--Sobic008G186300 Sobic005G110487 Sobic005G110487 Sobic003G417500--Sobic005G110487 Sobic003G417500--Sobic002G038733 Sobic003G417500--Sobic010G245900 Sobic003G417500--Sobic006G217950 Sobic001G361400 Sobic001G361400 Sobic002G379932--Sobic001G361400 Sobic006G025132 Sobic006G025132 Sobic002G379932--Sobic006G025132 Sobic005G028000 Sobic005G028000 Sobic002G379932--Sobic005G028000 Sobic007G116733 Sobic007G116733 Sobic002G379932--Sobic007G116733 Sobic005G094266 Sobic005G094266 Sobic002G379932--Sobic005G094266 Sobic005G191000 Sobic005G191000 Sobic002G379932--Sobic005G191000 Sobic006G218050 Sobic006G218050 Sobic002G379932--Sobic006G218050 Sobic004G256550 Sobic004G256550 Sobic002G379932--Sobic004G256550 Sobic001G244800 Sobic001G244800 Sobic002G379932--Sobic001G244800 Sobic006G060400 Sobic006G060400 Sobic001G324200--Sobic006G060400 Sobic003G163801 Sobic003G163801 Sobic001G324200--Sobic003G163801 Sobic010G117000 Sobic010G117000 Sobic001G324200--Sobic010G117000 Sobic005G039350 Sobic005G039350 Sobic001G324200--Sobic005G039350 Sobic006G113301 Sobic006G113301 Sobic001G324200--Sobic006G113301 Sobic008G174850 Sobic008G174850 Sobic001G324200--Sobic008G174850 Sobic005G049100 Sobic005G049100 Sobic001G324200--Sobic005G049100 Sobic001G112550 Sobic001G112550 Sobic001G324200--Sobic001G112550 Sobic001G324200--Sobic001G216900 Sobic006G242701 Sobic006G242701 Sobic001G060600--Sobic006G242701 Sobic004G185300 Sobic004G185300 Sobic001G060600--Sobic004G185300 Sobic001G060600--Sobic005G049100 Sobic009G158200 Sobic009G158200 Sobic001G060600--Sobic009G158200 Sobic003G406180 Sobic003G406180 Sobic001G060600--Sobic003G406180 Sobic004G358800 Sobic004G358800 Sobic001G060600--Sobic004G358800 Sobic001G042100 Sobic001G042100 Sobic001G060600--Sobic001G042100 Sobic007G050750 Sobic007G050750 Sobic001G060600--Sobic007G050750 Sobic010G234100 Sobic010G234100 Sobic001G060600--Sobic010G234100 Sobic003G042000 Sobic003G042000 Sobic010G022350--Sobic003G042000 Sobic010G022350--Sobic001G244800 Sobic010G022350--Sobic005G094266 Sobic006G257250 Sobic006G257250 Sobic010G022350--Sobic006G257250 Sobic004G056350 Sobic004G056350 Sobic010G022350--Sobic004G056350 Sobic004G311550 Sobic004G311550 Sobic010G022350--Sobic004G311550 Sobic003G389601 Sobic003G389601 Sobic010G022350--Sobic003G389601 Sobic001G455400 Sobic001G455400 Sobic010G022350--Sobic001G455400 Sobic009G024166 Sobic009G024166 Sobic010G022350--Sobic009G024166 Sobic001G443400 Sobic001G443400 Sobic003G357900--Sobic001G443400 Sobic005G165300 Sobic005G165300 Sobic003G357900--Sobic005G165300 Sobic009G025750 Sobic009G025750 Sobic003G357900--Sobic009G025750 Sobic005G168900 Sobic005G168900 Sobic003G357900--Sobic005G168900 Sobic006G174050 Sobic006G174050 Sobic003G357900--Sobic006G174050 Sobic001G334800 Sobic001G334800 Sobic003G357900--Sobic001G334800 Sobic006G250350 Sobic006G250350 Sobic003G357900--Sobic006G250350 Sobic002G018800 Sobic002G018800 Sobic003G357900--Sobic002G018800 Sobic010G166201 Sobic010G166201 Sobic003G357900--Sobic010G166201
Octagon: transcription factors


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