Gene annotation
| Transcriptome id | Sobic.002G198400.1 |
|---|---|
| Synonym | rep1;SbTCP5;SbTCP5, Sb02g024450, BRC1, ATTCP18, TCP18, TCP-like gene;Retarded palea1 |
| Functional annotation | CYC/tb1-like (ClassII) Subclade 20 TCP (PubMedID : 21444336) - (PubMedID : 23108465) "TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941) "plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054) TCP family transcription factor, putative, expressed |
| UniProt | A0A0A0UNG9 , A0A0A0UQM2 , A0A0A0UT14 , C5XC81 , A0A0A0UTH0 , I2AVY5 |
| Pfam | PF03634 |
| Panther DB | PTHR31072 PTHR31072:SF9 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G18550 : TCP family transcription factor |
|---|---|
| RAP-DB (Rice) | LOC_Os09g24480.1 : TCP family transcription factor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a031134 , Zm00025a046945 , Zm00025a013893 |
| Brachypodium | KQJ90193 |
| Barley | HORVU5Hr1G061270.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G480200 | THO complex subunit 1, putative, expressed | - |
| 2 | Sobic.001G106200 | Homeobox domain containing protein, expressed | - |
| 3 | Sobic.006G084800 | - | - |
| 4 | Sobic.003G267100 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed | K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1 |
| 5 | Sobic.010G245900 | - | - |
| 6 | Sobic.001G215000 | stilbene synthase, putative, expressed | - |
| 7 | Sobic.009G054450 | - | - |
| 8 | Sobic.004G219700 | OsWAK13 - OsWAK receptor-like protein kinase, expressed | - |
| 9 | Sobic.005G158000 | cytochrome P450 71E1, putative, expressed | K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase |
| 10 | Sobic.002G010100 | "may play a role as a meristem identity gene, as does AP1 in Arabidopsis"(PubMedID : 9065695)@OsMADS15 - MADS-box family gene with MIKCc type-box, expressed | K09264: MADS-box transcription factor, plant |
| 11 | Sobic.004G234400 | heavy metal-associated domain containing protein, expressed | - |
| 12 | Sobic.001G276600 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 13 | Sobic.001G145100 | RIO1 family protein, expressed | K08818: cell division cycle 2-like |
| 14 | Sobic.003G334500 | - | - |
| 15 | Sobic.007G135700 | "Increasing Grain number per panicle, TCP (Teosinte branched/Cycloidea/PCF) transcription factor"(PubMedID : 29483511)@CYC/tb1-like (ClassII) Subclade 19 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 16 | Sobic.008G163100 | OsFBX436 - F-box domain containing protein, expressed | - |
| 17 | Sobic.006G187300 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 18 | Sobic.004G146700 | peroxidase family protein, expressed | K00430: peroxidase |
| 19 | Sobic.003G033800 | expressed protein | - |
| 20 | Sobic.007G049200 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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