Gene annotation
Transcriptome id Sobic.003G267100.1
Synonym ATPGP4, P-glycoprotein, Sb03g031990, MDR4, ABCB4, SbPGP5, PGP4
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
MDR-like ABC transporter, putative, expressed
UniProt C5XHI2
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF238
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT2G47000 : ATP binding cassette subfamily B4
RAP-DB (Rice) LOC_Os01g50080.1 : MDR-like ABC transporter, putative, expressed
MaizeGDB (Corn) Zm00025a027912
Brachypodium PNT72641 , PNT72640 , PNT72637 , PNT72638 , PNT72639 , KQK09336 , KQK09321 , KQK09320 , PNT72656
Barley HORVU3Hr1G065240.10 , HORVU3Hr1G065240.12 , HORVU3Hr1G065240.14 , HORVU3Hr1G065240.15 , HORVU3Hr1G065240.16 , HORVU3Hr1G065240.46 , HORVU3Hr1G065240.45 , HORVU3Hr1G065240.44 , HORVU3Hr1G065240.43 , HORVU3Hr1G065240.42 , HORVU3Hr1G065240.41 , HORVU3Hr1G065240.40 , HORVU3Hr1G065260.41 , HORVU3Hr1G065260.29 , HORVU3Hr1G065260.28 , HORVU3Hr1G065260.25 , HORVU3Hr1G065240.29 , HORVU3Hr1G065240.25 , HORVU3Hr1G065240.24 , HORVU3Hr1G065240.8 , HORVU3Hr1G065240.9 , HORVU3Hr1G065240.2 , HORVU3Hr1G065240.3 , HORVU3Hr1G065240.1 , HORVU3Hr1G065240.6 , HORVU3Hr1G065240.7 , HORVU3Hr1G065240.4 , HORVU3Hr1G065240.5 , HORVU3Hr1G065260.43 , HORVU3Hr1G065260.40 , HORVU3Hr1G065260.10 , HORVU3Hr1G065260.27 , HORVU3Hr1G065260.26 , HORVU3Hr1G065260.23 , HORVU3Hr1G065260.22 , HORVU3Hr1G065260.20 , HORVU3Hr1G065260.34 , HORVU3Hr1G065260.35 , HORVU3Hr1G065260.37 , HORVU3Hr1G065260.30 , HORVU3Hr1G065260.31 , HORVU3Hr1G065260.32 , HORVU3Hr1G065260.33 , HORVU3Hr1G065260.38 , HORVU3Hr1G065240.18 , HORVU3Hr1G065240.19 , HORVU3Hr1G065240.11 , HORVU3Hr1G065240.17 , HORVU3Hr1G065260.8 , HORVU3Hr1G065260.9 , HORVU3Hr1G065260.4 , HORVU3Hr1G065260.5 , HORVU3Hr1G065260.6 , HORVU3Hr1G065260.7 , HORVU3Hr1G065260.1 , HORVU3Hr1G065260.3 , HORVU3Hr1G065240.27 , HORVU3Hr1G065240.26 , HORVU3Hr1G065240.21 , HORVU3Hr1G065240.20 , HORVU3Hr1G065240.23 , HORVU3Hr1G065240.22 , HORVU3Hr1G065240.28 , HORVU3Hr1G065260.18 , HORVU3Hr1G065260.19 , HORVU3Hr1G065260.16 , HORVU3Hr1G065260.17 , HORVU3Hr1G065260.15 , HORVU3Hr1G065260.13 , HORVU3Hr1G065260.11 , HORVU3Hr1G065240.32 , HORVU3Hr1G065240.33 , HORVU3Hr1G065240.30 , HORVU3Hr1G065240.36 , HORVU3Hr1G065240.37 , HORVU3Hr1G065240.34 , HORVU3Hr1G065240.35 , HORVU3Hr1G065240.38 , HORVU3Hr1G065240.39
Wheat TraesCS3D02G258300 , TraesCS3D02G258300 , TraesCS3D02G258300 , TraesCS3A02G258400 , TraesCS3A02G258400 , TraesCS3A02G258400 , TraesCS3A02G258400 , TraesCS3A02G258400 , TraesCS3A02G258400 , TraesCS3A02G258300 , TraesCS3D02G258200 , TraesCS3B02G291000 , TraesCS3B02G291000 , TraesCS2B02G012200 , TraesCS3D02G258200 , TraesCS3D02G258200 , TraesCS3D02G258200 , TraesCS3B02G291100 , TraesCS3B02G291100 , TraesCS3B02G291100 , TraesCS3B02G291100 , TraesCS3B02G291100 , TraesCS2A02G009700 , TraesCS3D02G258200 , TraesCS3A02G258300 , TraesCS3A02G258300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G025800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tetraspanin family protein, putative, expressed -
2 Sobic.003G334500 - -
3 Sobic.002G219000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@plant viral response family protein, putative, expressed -
4 Sobic.008G191200 ATPase 3, putative, expressed -
5 Sobic.010G132100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thioredoxin domain-containing protein 17, putative, expressed -
6 Sobic.004G219700 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
7 Sobic.003G357900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@strictosidine synthase, putative, expressed -
8 Sobic.003G142500 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
9 Sobic.005G004900 PMR5, putative, expressed -
10 Sobic.008G142500 Leucine Rich Repeat family protein, expressed -
11 Sobic.004G163100 expressed protein -
12 Sobic.003G267300 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
13 Sobic.010G036700 expressed protein -
14 Sobic.001G014600 - -
15 Sobic.006G083050 - -
16 Sobic.003G067900 - -
17 Sobic.005G116800 - -
18 Sobic.005G187700 receptor kinase, putative, expressed -
19 Sobic.009G223400 hypro1, putative, expressed -
20 Sobic.009G173700 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic003G267100 Sobic003G267100 Sobic009G025800 Sobic009G025800 Sobic003G267100--Sobic009G025800 Sobic003G334500 Sobic003G334500 Sobic003G267100--Sobic003G334500 Sobic002G219000 Sobic002G219000 Sobic003G267100--Sobic002G219000 Sobic008G191200 Sobic008G191200 Sobic003G267100--Sobic008G191200 Sobic010G132100 Sobic010G132100 Sobic003G267100--Sobic010G132100 Sobic004G219700 Sobic004G219700 Sobic003G267100--Sobic004G219700 Sobic003G357900 Sobic003G357900 Sobic003G267100--Sobic003G357900 Sobic003G142500 Sobic003G142500 Sobic003G267100--Sobic003G142500 Sobic005G004900 Sobic005G004900 Sobic003G267100--Sobic005G004900 Sobic009G199401 Sobic009G199401 Sobic009G025800--Sobic009G199401 Sobic002G421100 Sobic002G421100 Sobic009G025800--Sobic002G421100 Sobic010G229025 Sobic010G229025 Sobic009G025800--Sobic010G229025 Sobic006G192900 Sobic006G192900 Sobic009G025800--Sobic006G192900 Sobic009G025800--Sobic003G334500 Sobic001G489400 Sobic001G489400 Sobic009G025800--Sobic001G489400 Sobic004G093800 Sobic004G093800 Sobic009G025800--Sobic004G093800 Sobic008G142500 Sobic008G142500 Sobic009G025800--Sobic008G142500 Sobic002G307500 Sobic002G307500 Sobic009G025800--Sobic002G307500 Sobic008G041500 Sobic008G041500 Sobic003G334500--Sobic008G041500 Sobic007G179100 Sobic007G179100 Sobic003G334500--Sobic007G179100 Sobic009G134700 Sobic009G134700 Sobic003G334500--Sobic009G134700 Sobic006G083050 Sobic006G083050 Sobic003G334500--Sobic006G083050 Sobic006G214800 Sobic006G214800 Sobic003G334500--Sobic006G214800 Sobic001G180950 Sobic001G180950 Sobic003G334500--Sobic001G180950 Sobic010G156300 Sobic010G156300 Sobic003G334500--Sobic010G156300 Sobic003G334500--Sobic008G142500 Sobic010G166850 Sobic010G166850 Sobic003G334500--Sobic010G166850 Sobic008G147600 Sobic008G147600 Sobic002G219000--Sobic008G147600 Sobic002G219100 Sobic002G219100 Sobic002G219000--Sobic002G219100 Sobic004G074400 Sobic004G074400 Sobic002G219000--Sobic004G074400 Sobic001G279800 Sobic001G279800 Sobic002G219000--Sobic001G279800 Sobic009G180900 Sobic009G180900 Sobic002G219000--Sobic009G180900 Sobic005G150700 Sobic005G150700 Sobic002G219000--Sobic005G150700 Sobic002G099932 Sobic002G099932 Sobic002G219000--Sobic002G099932 Sobic002G160300 Sobic002G160300 Sobic002G219000--Sobic002G160300 Sobic009G037500 Sobic009G037500 Sobic002G219000--Sobic009G037500 Sobic008G191200--Sobic010G132100 Sobic009G182500 Sobic009G182500 Sobic008G191200--Sobic009G182500 Sobic003G134100 Sobic003G134100 Sobic008G191200--Sobic003G134100 Sobic004G338200 Sobic004G338200 Sobic008G191200--Sobic004G338200 Sobic004G176950 Sobic004G176950 Sobic008G191200--Sobic004G176950 Sobic008G191200--Sobic003G267100 Sobic009G223400 Sobic009G223400 Sobic008G191200--Sobic009G223400 Sobic008G191200--Sobic009G025800 Sobic006G094800 Sobic006G094800 Sobic008G191200--Sobic006G094800 Sobic009G027200 Sobic009G027200 Sobic010G132100--Sobic009G027200 Sobic002G112200 Sobic002G112200 Sobic010G132100--Sobic002G112200 Sobic004G223700 Sobic004G223700 Sobic010G132100--Sobic004G223700 Sobic001G050650 Sobic001G050650 Sobic010G132100--Sobic001G050650 Sobic007G098050 Sobic007G098050 Sobic010G132100--Sobic007G098050 Sobic001G449300 Sobic001G449300 Sobic010G132100--Sobic001G449300 Sobic010G098800 Sobic010G098800 Sobic010G132100--Sobic010G098800 Sobic004G206000 Sobic004G206000 Sobic010G132100--Sobic004G206000 SobicK031400 SobicK031400 Sobic010G132100--SobicK031400 Sobic010G245900 Sobic010G245900 Sobic004G219700--Sobic010G245900 Sobic003G397400 Sobic003G397400 Sobic004G219700--Sobic003G397400 Sobic007G073750 Sobic007G073750 Sobic004G219700--Sobic007G073750 Sobic003G137900 Sobic003G137900 Sobic004G219700--Sobic003G137900 Sobic006G272700 Sobic006G272700 Sobic004G219700--Sobic006G272700 Sobic010G253500 Sobic010G253500 Sobic004G219700--Sobic010G253500 Sobic001G210250 Sobic001G210250 Sobic004G219700--Sobic001G210250 Sobic003G083000 Sobic003G083000 Sobic004G219700--Sobic003G083000 Sobic005G016900 Sobic005G016900 Sobic004G219700--Sobic005G016900 Sobic001G443400 Sobic001G443400 Sobic003G357900--Sobic001G443400 Sobic005G165300 Sobic005G165300 Sobic003G357900--Sobic005G165300 Sobic009G025750 Sobic009G025750 Sobic003G357900--Sobic009G025750 Sobic005G168900 Sobic005G168900 Sobic003G357900--Sobic005G168900 Sobic006G174050 Sobic006G174050 Sobic003G357900--Sobic006G174050 Sobic001G334800 Sobic001G334800 Sobic003G357900--Sobic001G334800 Sobic006G250350 Sobic006G250350 Sobic003G357900--Sobic006G250350 Sobic002G018800 Sobic002G018800 Sobic003G357900--Sobic002G018800 Sobic010G166201 Sobic010G166201 Sobic003G357900--Sobic010G166201 Sobic002G094000 Sobic002G094000 Sobic003G142500--Sobic002G094000 Sobic002G094100 Sobic002G094100 Sobic003G142500--Sobic002G094100 Sobic009G213150 Sobic009G213150 Sobic003G142500--Sobic009G213150 Sobic002G073000 Sobic002G073000 Sobic003G142500--Sobic002G073000 Sobic003G142500--Sobic009G025750 Sobic005G024500 Sobic005G024500 Sobic003G142500--Sobic005G024500 Sobic004G278800 Sobic004G278800 Sobic003G142500--Sobic004G278800 Sobic005G187700 Sobic005G187700 Sobic003G142500--Sobic005G187700 Sobic005G019300 Sobic005G019300 Sobic003G142500--Sobic005G019300 Sobic001G326500 Sobic001G326500 Sobic005G004900--Sobic001G326500 Sobic005G004900--Sobic008G142500 Sobic009G173700 Sobic009G173700 Sobic005G004900--Sobic009G173700 Sobic006G221500 Sobic006G221500 Sobic005G004900--Sobic006G221500 Sobic004G267400 Sobic004G267400 Sobic005G004900--Sobic004G267400 Sobic010G089350 Sobic010G089350 Sobic005G004900--Sobic010G089350 Sobic003G068100 Sobic003G068100 Sobic005G004900--Sobic003G068100 Sobic001G014600 Sobic001G014600 Sobic005G004900--Sobic001G014600 Sobic001G479900 Sobic001G479900 Sobic005G004900--Sobic001G479900
Octagon: transcription factors


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