Gene annotation
Transcriptome id Sobic.008G191200.1
Synonym Sb08g023140, AATP1
Functional annotation ATPase 3, putative, expressed
UniProt A0A1B6PEM1
Pfam PF00004 PF14363
Panther DB PTHR23070 PTHR23070:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G40010 : AAA-ATPase 1
RAP-DB (Rice) LOC_Os12g24320.1 : ATPase 3, putative, expressed
MaizeGDB (Corn) Zm00025a004881 , Zm00025a016039 , Zm00025a045292 , Zm00025a004879 , Zm00025a010901 , Zm00025a008606
Brachypodium KQK15981 , KQJ85588 , KQK20482 , KQK20481 , KQJ85593 , KQJ85594 , KQK15975 , PNT75003 , PNT76854 , PNT76855 , PNT76856 , PNT76857 , KQJ98547 , KQK20476 , KQK20474 , KQK20475
Barley HORVU5Hr1G000640.9 , HORVU5Hr1G000640.8 , HORVU5Hr1G000640.3 , HORVU5Hr1G000640.5 , HORVU5Hr1G000640.4 , HORVU5Hr1G000640.7 , HORVU5Hr1G000640.6 , HORVU5Hr1G026270.4 , HORVU5Hr1G026270.5 , HORVU5Hr1G026270.6 , HORVU5Hr1G026270.1 , HORVU5Hr1G026270.2 , HORVU5Hr1G026270.3 , HORVU5Hr1G000640.1 , HORVU3Hr1G117690.10 , HORVU2Hr1G046330.4 , HORVU2Hr1G046330.1 , HORVU2Hr1G046330.2 , HORVU2Hr1G046330.3 , HORVU3Hr1G114150.2 , HORVU3Hr1G117690.3 , HORVU3Hr1G117690.2 , HORVU3Hr1G117690.1 , HORVU3Hr1G117690.7 , HORVU3Hr1G117690.6 , HORVU3Hr1G117690.5 , HORVU3Hr1G117690.4 , HORVU3Hr1G117690.9 , HORVU3Hr1G117690.8 , HORVU3Hr1G086670.1 , HORVU3Hr1G086670.2 , HORVU3Hr1G086670.3 , HORVU3Hr1G086670.4 , HORVU3Hr1G086670.5 , HORVU6Hr1G021770.3 , HORVU6Hr1G021770.2 , HORVU6Hr1G021770.1 , HORVU6Hr1G021770.4 , HORVU1Hr1G063390.4 , HORVU1Hr1G063390.5 , HORVU1Hr1G063390.1 , HORVU1Hr1G063390.2 , HORVU1Hr1G063390.3 , HORVU5Hr1G107410.2 , HORVU5Hr1G107410.3 , HORVU5Hr1G107410.4 , HORVU3Hr1G114150.1 , HORVU2Hr1G046180.3 , HORVU2Hr1G046180.2 , HORVU2Hr1G046180.1 , HORVU2Hr1G046180.5 , HORVU2Hr1G046180.4 , HORVU5Hr1G000650.1 , HORVU3Hr1G052880.7 , HORVU3Hr1G052880.4 , HORVU3Hr1G052880.3
Wheat TraesCS3A02G215000 , TraesCS3A02G357100 , TraesCS2A02G221700 , TraesCS3B02G389700 , TraesCS3D02G350900 , TraesCS7D02G502900 , TraesCS2D02G227400 , TraesCS3D02G351000 , TraesCS4A02G384300 , TraesCS2D02G227500 , TraesCS3A02G356800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G191200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G132100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thioredoxin domain-containing protein 17, putative, expressed -
2 Sobic.009G182500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
4 Sobic.004G338200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsWAK24 - OsWAK receptor-like protein kinase, expressed -
5 Sobic.004G176950 - -
6 Sobic.003G267100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
7 Sobic.009G223400 hypro1, putative, expressed -
8 Sobic.009G025800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tetraspanin family protein, putative, expressed -
9 Sobic.006G094800 - -
10 Sobic.009G141201 - -
11 Sobic.002G335100 expressed protein -
12 Sobic.002G371800 DC1 domain-containing protein, putative, expressed -
13 Sobic.008G040800 OsFBX396 - F-box domain containing protein, expressed -
14 Sobic.007G227500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.006G217400 expressed protein -
16 Sobic.003G444900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ankyrin repeat domain-containing protein 28, putative, expressed -
17 Sobic.004G163350 - -
18 Sobic.009G134832 - -
19 Sobic.005G104850 - -
20 Sobic.003G267700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1


Gene co-expression network
sample Sobic008G191200 Sobic008G191200 Sobic010G132100 Sobic010G132100 Sobic008G191200--Sobic010G132100 Sobic009G182500 Sobic009G182500 Sobic008G191200--Sobic009G182500 Sobic003G134100 Sobic003G134100 Sobic008G191200--Sobic003G134100 Sobic004G338200 Sobic004G338200 Sobic008G191200--Sobic004G338200 Sobic004G176950 Sobic004G176950 Sobic008G191200--Sobic004G176950 Sobic003G267100 Sobic003G267100 Sobic008G191200--Sobic003G267100 Sobic009G223400 Sobic009G223400 Sobic008G191200--Sobic009G223400 Sobic009G025800 Sobic009G025800 Sobic008G191200--Sobic009G025800 Sobic006G094800 Sobic006G094800 Sobic008G191200--Sobic006G094800 Sobic009G027200 Sobic009G027200 Sobic010G132100--Sobic009G027200 Sobic002G112200 Sobic002G112200 Sobic010G132100--Sobic002G112200 Sobic004G223700 Sobic004G223700 Sobic010G132100--Sobic004G223700 Sobic001G050650 Sobic001G050650 Sobic010G132100--Sobic001G050650 Sobic007G098050 Sobic007G098050 Sobic010G132100--Sobic007G098050 Sobic001G449300 Sobic001G449300 Sobic010G132100--Sobic001G449300 Sobic010G098800 Sobic010G098800 Sobic010G132100--Sobic010G098800 Sobic004G206000 Sobic004G206000 Sobic010G132100--Sobic004G206000 SobicK031400 SobicK031400 Sobic010G132100--SobicK031400 Sobic009G182500--Sobic004G338200 Sobic001G020200 Sobic001G020200 Sobic009G182500--Sobic001G020200 Sobic008G040800 Sobic008G040800 Sobic009G182500--Sobic008G040800 Sobic009G161700 Sobic009G161700 Sobic009G182500--Sobic009G161700 Sobic003G314200 Sobic003G314200 Sobic009G182500--Sobic003G314200 Sobic003G077800 Sobic003G077800 Sobic009G182500--Sobic003G077800 Sobic009G182500--Sobic008G191200 Sobic009G182500--Sobic004G176950 Sobic009G182500--Sobic010G132100 Sobic001G207301 Sobic001G207301 Sobic003G134100--Sobic001G207301 Sobic006G205800 Sobic006G205800 Sobic003G134100--Sobic006G205800 Sobic010G192700 Sobic010G192700 Sobic003G134100--Sobic010G192700 Sobic003G134100--Sobic009G027200 Sobic003G134100--Sobic010G132100 Sobic003G226600 Sobic003G226600 Sobic003G134100--Sobic003G226600 Sobic006G217400 Sobic006G217400 Sobic003G134100--Sobic006G217400 Sobic002G145600 Sobic002G145600 Sobic003G134100--Sobic002G145600 Sobic003G134100--Sobic003G314200 Sobic004G338200--Sobic001G020200 Sobic004G243000 Sobic004G243000 Sobic004G338200--Sobic004G243000 Sobic004G338200--Sobic003G314200 Sobic007G227500 Sobic007G227500 Sobic004G338200--Sobic007G227500 Sobic004G338200--Sobic008G040800 Sobic004G338200--Sobic009G182500 Sobic003G268800 Sobic003G268800 Sobic004G338200--Sobic003G268800 Sobic004G338200--Sobic009G161700 Sobic004G338200--Sobic006G094800 Sobic002G245700 Sobic002G245700 Sobic004G176950--Sobic002G245700 Sobic002G413100 Sobic002G413100 Sobic004G176950--Sobic002G413100 Sobic001G148000 Sobic001G148000 Sobic004G176950--Sobic001G148000 Sobic010G268500 Sobic010G268500 Sobic004G176950--Sobic010G268500 Sobic003G053100 Sobic003G053100 Sobic004G176950--Sobic003G053100 Sobic001G413300 Sobic001G413300 Sobic004G176950--Sobic001G413300 Sobic003G208200 Sobic003G208200 Sobic004G176950--Sobic003G208200 Sobic007G199901 Sobic007G199901 Sobic004G176950--Sobic007G199901 Sobic003G117850 Sobic003G117850 Sobic004G176950--Sobic003G117850 Sobic003G267100--Sobic009G025800 Sobic003G334500 Sobic003G334500 Sobic003G267100--Sobic003G334500 Sobic002G219000 Sobic002G219000 Sobic003G267100--Sobic002G219000 Sobic003G267100--Sobic008G191200 Sobic003G267100--Sobic010G132100 Sobic004G219700 Sobic004G219700 Sobic003G267100--Sobic004G219700 Sobic003G357900 Sobic003G357900 Sobic003G267100--Sobic003G357900 Sobic003G142500 Sobic003G142500 Sobic003G267100--Sobic003G142500 Sobic005G004900 Sobic005G004900 Sobic003G267100--Sobic005G004900 Sobic004G163350 Sobic004G163350 Sobic009G223400--Sobic004G163350 Sobic004G169401 Sobic004G169401 Sobic009G223400--Sobic004G169401 Sobic003G018150 Sobic003G018150 Sobic009G223400--Sobic003G018150 Sobic006G235801 Sobic006G235801 Sobic009G223400--Sobic006G235801 Sobic010G100600 Sobic010G100600 Sobic009G223400--Sobic010G100600 Sobic007G167600 Sobic007G167600 Sobic009G223400--Sobic007G167600 Sobic010G036700 Sobic010G036700 Sobic009G223400--Sobic010G036700 Sobic002G172800 Sobic002G172800 Sobic009G223400--Sobic002G172800 Sobic001G100300 Sobic001G100300 Sobic009G223400--Sobic001G100300 Sobic009G199401 Sobic009G199401 Sobic009G025800--Sobic009G199401 Sobic002G421100 Sobic002G421100 Sobic009G025800--Sobic002G421100 Sobic010G229025 Sobic010G229025 Sobic009G025800--Sobic010G229025 Sobic006G192900 Sobic006G192900 Sobic009G025800--Sobic006G192900 Sobic009G025800--Sobic003G334500 Sobic001G489400 Sobic001G489400 Sobic009G025800--Sobic001G489400 Sobic004G093800 Sobic004G093800 Sobic009G025800--Sobic004G093800 Sobic008G142500 Sobic008G142500 Sobic009G025800--Sobic008G142500 Sobic002G307500 Sobic002G307500 Sobic009G025800--Sobic002G307500 Sobic006G206600 Sobic006G206600 Sobic006G094800--Sobic006G206600 Sobic006G094800--Sobic001G207301 Sobic009G218700 Sobic009G218700 Sobic006G094800--Sobic009G218700 Sobic006G094800--Sobic003G314200 Sobic006G094800--Sobic003G226600 Sobic001G450900 Sobic001G450900 Sobic006G094800--Sobic001G450900 Sobic006G100150 Sobic006G100150 Sobic006G094800--Sobic006G100150 Sobic010G186900 Sobic010G186900 Sobic006G094800--Sobic010G186900 Sobic006G094800--Sobic001G148000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.