Gene annotation
Transcriptome id Sobic.003G267300.1
Synonym P-glycoprotein, Sb03g032000, PGP11, SbPGP6
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment" (PubMedID : 20528920)
ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1B6Q5I8
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF272
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT1G02520 : P-glycoprotein 11
RAP-DB (Rice) LOC_Os01g50100.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a038889
Brachypodium PNT72645 , PNT72647 , PNT72641 , PNT72642 , PNT72649 , PNT72648 , PNT70780 , PNT72637 , PNT70779 , PNT70778 , PNT72639 , PNT72651 , KQK09330 , KQK09331 , KQK09320 , PNT72650 , KQK09327 , KQK09326 , KQK09329 , KQK09328
Barley HORVU6Hr1G021320.8 , HORVU6Hr1G021320.9 , HORVU6Hr1G021320.5 , HORVU6Hr1G021320.6 , HORVU6Hr1G021320.1 , HORVU6Hr1G021320.2 , HORVU6Hr1G021320.3 , HORVU3Hr1G065280.8 , HORVU3Hr1G065280.4 , HORVU3Hr1G065240.12 , HORVU3Hr1G065240.14 , HORVU3Hr1G065240.15 , HORVU3Hr1G065240.16 , HORVU3Hr1G065390.28 , HORVU6Hr1G021320.27 , HORVU6Hr1G021320.26 , HORVU6Hr1G021320.25 , HORVU6Hr1G021320.24 , HORVU6Hr1G021320.22 , HORVU6Hr1G021320.20 , HORVU6Hr1G021320.29 , HORVU6Hr1G021320.28 , HORVU6Hr1G021320.34 , HORVU6Hr1G021320.36 , HORVU6Hr1G021320.37 , HORVU6Hr1G021320.30 , HORVU6Hr1G021320.31 , HORVU6Hr1G021320.32 , HORVU6Hr1G021320.38 , HORVU6Hr1G021320.39 , HORVU3Hr1G065280.10 , HORVU3Hr1G065280.9 , HORVU3Hr1G065280.6 , HORVU3Hr1G065280.7 , HORVU3Hr1G065280.5 , HORVU3Hr1G065280.2 , HORVU3Hr1G065280.3 , HORVU3Hr1G065280.1 , HORVU6Hr1G021320.18 , HORVU6Hr1G021320.19 , HORVU6Hr1G021320.16 , HORVU6Hr1G021320.14 , HORVU6Hr1G021320.15 , HORVU6Hr1G021320.13 , HORVU6Hr1G021320.10 , HORVU6Hr1G021320.11 , HORVU3Hr1G065390.45 , HORVU3Hr1G065390.44 , HORVU3Hr1G065390.46 , HORVU3Hr1G065390.41 , HORVU3Hr1G065390.40 , HORVU3Hr1G065390.43 , HORVU3Hr1G065390.42 , HORVU3Hr1G065320.33 , HORVU3Hr1G065320.32 , HORVU3Hr1G065320.31 , HORVU3Hr1G065320.30 , HORVU3Hr1G065320.37 , HORVU3Hr1G065320.36 , HORVU3Hr1G065320.35 , HORVU3Hr1G065320.34 , HORVU3Hr1G065320.39 , HORVU3Hr1G065320.38 , HORVU3Hr1G065320.20 , HORVU3Hr1G065320.21 , HORVU3Hr1G065320.22 , HORVU3Hr1G065320.23 , HORVU3Hr1G065320.24 , HORVU3Hr1G065320.25 , HORVU3Hr1G065320.26 , HORVU3Hr1G065320.27 , HORVU3Hr1G065320.28 , HORVU3Hr1G065320.29 , HORVU3Hr1G065390.5 , HORVU3Hr1G065390.6 , HORVU3Hr1G065390.7 , HORVU3Hr1G065390.1 , HORVU3Hr1G065390.3 , HORVU3Hr1G065390.8 , HORVU3Hr1G065240.29 , HORVU3Hr1G065240.28 , HORVU3Hr1G065240.25 , HORVU3Hr1G065390.29 , HORVU3Hr1G065240.24 , HORVU3Hr1G065390.27 , HORVU3Hr1G065390.26 , HORVU3Hr1G065390.24 , HORVU3Hr1G065390.23 , HORVU3Hr1G065390.22 , HORVU3Hr1G065390.21 , HORVU3Hr1G065390.20 , HORVU3Hr1G065320.10 , HORVU3Hr1G065320.19 , HORVU3Hr1G065320.18 , HORVU3Hr1G065240.8 , HORVU3Hr1G065240.9 , HORVU3Hr1G065240.2 , HORVU3Hr1G065240.3 , HORVU3Hr1G065240.1 , HORVU3Hr1G065240.6 , HORVU3Hr1G065240.7 , HORVU3Hr1G065240.4 , HORVU3Hr1G065240.5 , HORVU3Hr1G065280.11 , HORVU3Hr1G065390.38 , HORVU3Hr1G065390.39 , HORVU3Hr1G065390.34 , HORVU3Hr1G065390.35 , HORVU3Hr1G065390.36 , HORVU3Hr1G065390.37 , HORVU3Hr1G065390.30 , HORVU3Hr1G065390.31 , HORVU3Hr1G065390.32 , HORVU3Hr1G065390.33 , HORVU3Hr1G065390.16 , HORVU3Hr1G065390.17 , HORVU3Hr1G065390.14 , HORVU3Hr1G065390.15 , HORVU3Hr1G065390.12 , HORVU3Hr1G065390.13 , HORVU3Hr1G065390.11 , HORVU3Hr1G065390.18 , HORVU3Hr1G065390.19 , HORVU6Hr1G021320.33 , HORVU3Hr1G065320.51 , HORVU3Hr1G065320.50 , HORVU3Hr1G065320.53 , HORVU3Hr1G065320.52 , HORVU3Hr1G065320.55 , HORVU3Hr1G065320.54 , HORVU3Hr1G065320.57 , HORVU3Hr1G065320.56 , HORVU3Hr1G065320.58 , HORVU3Hr1G065320.46 , HORVU3Hr1G065320.47 , HORVU3Hr1G065320.44 , HORVU3Hr1G065320.45 , HORVU3Hr1G065320.42 , HORVU3Hr1G065320.43 , HORVU3Hr1G065320.40 , HORVU3Hr1G065320.41 , HORVU3Hr1G065320.48 , HORVU3Hr1G065320.49 , HORVU3Hr1G065240.18 , HORVU3Hr1G065240.19 , HORVU3Hr1G065240.10 , HORVU3Hr1G065240.11 , HORVU3Hr1G065240.13 , HORVU6Hr1G021320.35 , HORVU3Hr1G065240.27 , HORVU3Hr1G065240.26 , HORVU3Hr1G065240.21 , HORVU3Hr1G065240.20 , HORVU3Hr1G065240.23 , HORVU3Hr1G065240.22 , HORVU6Hr1G021320.45 , HORVU6Hr1G021320.44 , HORVU6Hr1G021320.46 , HORVU6Hr1G021320.41 , HORVU6Hr1G021320.40 , HORVU6Hr1G021320.43 , HORVU6Hr1G021320.42 , HORVU3Hr1G065240.32 , HORVU3Hr1G065240.33 , HORVU3Hr1G065240.30 , HORVU3Hr1G065240.31 , HORVU3Hr1G065240.36 , HORVU3Hr1G065240.34 , HORVU3Hr1G065240.35
Wheat TraesCS3D02G258300 , TraesCS3D02G258300 , TraesCS3D02G258300 , TraesCS3A02G258300 , TraesCS3A02G258300 , TraesCS3D02G258200 , TraesCS3D02G257500 , TraesCS3B02G291000 , TraesCS3B02G291000 , TraesCS3A02G258200 , TraesCS3D02G258200 , TraesCS3D02G258200 , TraesCS6B02G145700 , TraesCS3B02G290700 , TraesCS3B02G290300 , TraesCS3B02G290300 , TraesCS3D02G258100 , TraesCS3B02G291100 , TraesCS3B02G291100 , TraesCS3A02G258000 , TraesCS6D02G107500 , TraesCS3B02G290900 , TraesCS3A02G257500 , TraesCS3A02G257500 , TraesCS3D02G258200 , TraesCS3D02G258200 , TraesCS6B02G145600 , TraesCS3A02G258300 , TraesCS6D02G107600 , TraesCS3D02G257900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G334500 - -
2 Sobic.002G182900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G050550 - -
4 Sobic.010G233200 phosphosulfolactate synthase-related protein, putative, expressed -
5 Sobic.005G230100 GRAS family transcription factor domain containing protein, expressed -
6 Sobic.003G251200 S-locus-like receptor protein kinase, putative, expressed -
7 Sobic.008G016850 - -
8 Sobic.001G170600 OsFBX85 - F-box domain containing protein, expressed -
9 Sobic.009G025800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tetraspanin family protein, putative, expressed -
10 Sobic.003G267100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
11 Sobic.004G299300 protein kinase domain containing protein, expressed -
12 Sobic.001G454850 - -
13 Sobic.007G055500 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein terpene synthase 10 (Os)(PubMedID : 27208977)@terpene synthase, putative, expressed -
14 Sobic.004G219700 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
15 Sobic.004G271350 - -
16 Sobic.009G098150 - -
17 Sobic.002G319900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
18 Sobic.009G134700 - -
19 Sobic.008G041500 - -
20 Sobic.003G357900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@strictosidine synthase, putative, expressed -


Gene co-expression network
sample Sobic003G267300 Sobic003G267300 Sobic003G334500 Sobic003G334500 Sobic003G267300--Sobic003G334500 Sobic002G182900 Sobic002G182900 Sobic003G267300--Sobic002G182900 Sobic006G050550 Sobic006G050550 Sobic003G267300--Sobic006G050550 Sobic010G233200 Sobic010G233200 Sobic003G267300--Sobic010G233200 Sobic005G230100 Sobic005G230100 Sobic003G267300--Sobic005G230100 Sobic003G251200 Sobic003G251200 Sobic003G267300--Sobic003G251200 Sobic008G016850 Sobic008G016850 Sobic003G267300--Sobic008G016850 Sobic001G170600 Sobic001G170600 Sobic003G267300--Sobic001G170600 Sobic009G025800 Sobic009G025800 Sobic003G267300--Sobic009G025800 Sobic008G041500 Sobic008G041500 Sobic003G334500--Sobic008G041500 Sobic007G179100 Sobic007G179100 Sobic003G334500--Sobic007G179100 Sobic009G134700 Sobic009G134700 Sobic003G334500--Sobic009G134700 Sobic006G083050 Sobic006G083050 Sobic003G334500--Sobic006G083050 Sobic006G214800 Sobic006G214800 Sobic003G334500--Sobic006G214800 Sobic001G180950 Sobic001G180950 Sobic003G334500--Sobic001G180950 Sobic010G156300 Sobic010G156300 Sobic003G334500--Sobic010G156300 Sobic008G142500 Sobic008G142500 Sobic003G334500--Sobic008G142500 Sobic010G166850 Sobic010G166850 Sobic003G334500--Sobic010G166850 Sobic009G253950 Sobic009G253950 Sobic002G182900--Sobic009G253950 Sobic002G182800 Sobic002G182800 Sobic002G182900--Sobic002G182800 Sobic009G216900 Sobic009G216900 Sobic002G182900--Sobic009G216900 Sobic003G040800 Sobic003G040800 Sobic002G182900--Sobic003G040800 Sobic003G233900 Sobic003G233900 Sobic002G182900--Sobic003G233900 Sobic009G128300 Sobic009G128300 Sobic002G182900--Sobic009G128300 Sobic002G182900--Sobic006G050550 Sobic010G085400 Sobic010G085400 Sobic002G182900--Sobic010G085400 Sobic003G227600 Sobic003G227600 Sobic002G182900--Sobic003G227600 Sobic005G181600 Sobic005G181600 Sobic006G050550--Sobic005G181600 Sobic006G050550--Sobic002G182900 Sobic006G050550--Sobic005G230100 Sobic010G245900 Sobic010G245900 Sobic006G050550--Sobic010G245900 Sobic006G050550--Sobic003G267300 Sobic006G050550--Sobic009G253950 Sobic006G050550--Sobic008G016850 Sobic001G134000 Sobic001G134000 Sobic006G050550--Sobic001G134000 Sobic006G050550--Sobic003G334500 Sobic010G233200--Sobic003G267300 Sobic010G233200--Sobic002G182900 Sobic010G233200--Sobic006G050550 Sobic010G233200--Sobic010G245900 Sobic010G233200--Sobic001G134000 Sobic008G075700 Sobic008G075700 Sobic010G233200--Sobic008G075700 Sobic002G172000 Sobic002G172000 Sobic010G233200--Sobic002G172000 Sobic010G132100 Sobic010G132100 Sobic010G233200--Sobic010G132100 Sobic010G233200--Sobic003G334500 Sobic005G230100--Sobic001G134000 Sobic005G230100--Sobic002G182900 Sobic004G248000 Sobic004G248000 Sobic005G230100--Sobic004G248000 Sobic002G319900 Sobic002G319900 Sobic005G230100--Sobic002G319900 Sobic005G230100--Sobic006G050550 Sobic004G149150 Sobic004G149150 Sobic005G230100--Sobic004G149150 Sobic005G230100--Sobic003G334500 Sobic007G177901 Sobic007G177901 Sobic005G230100--Sobic007G177901 Sobic001G454850 Sobic001G454850 Sobic005G230100--Sobic001G454850 Sobic003G068100 Sobic003G068100 Sobic003G251200--Sobic003G068100 Sobic003G251200--Sobic006G083050 Sobic003G251200--Sobic008G142500 Sobic005G116800 Sobic005G116800 Sobic003G251200--Sobic005G116800 Sobic005G041150 Sobic005G041150 Sobic003G251200--Sobic005G041150 Sobic003G067900 Sobic003G067900 Sobic003G251200--Sobic003G067900 Sobic003G251200--Sobic009G134700 Sobic003G251200--Sobic010G156300 Sobic001G326500 Sobic001G326500 Sobic003G251200--Sobic001G326500 Sobic008G016850--Sobic005G181600 Sobic008G016850--Sobic002G182900 Sobic010G061300 Sobic010G061300 Sobic008G016850--Sobic010G061300 Sobic004G055300 Sobic004G055300 Sobic008G016850--Sobic004G055300 Sobic008G016850--Sobic003G267300 Sobic008G016850--Sobic006G050550 Sobic001G147800 Sobic001G147800 Sobic008G016850--Sobic001G147800 Sobic007G170200 Sobic007G170200 Sobic008G016850--Sobic007G170200 Sobic008G016850--Sobic009G253950 Sobic009G091940 Sobic009G091940 Sobic001G170600--Sobic009G091940 Sobic002G160500 Sobic002G160500 Sobic001G170600--Sobic002G160500 Sobic003G267150 Sobic003G267150 Sobic001G170600--Sobic003G267150 Sobic004G262550 Sobic004G262550 Sobic001G170600--Sobic004G262550 Sobic003G389150 Sobic003G389150 Sobic001G170600--Sobic003G389150 Sobic009G199401 Sobic009G199401 Sobic009G025800--Sobic009G199401 Sobic002G421100 Sobic002G421100 Sobic009G025800--Sobic002G421100 Sobic010G229025 Sobic010G229025 Sobic009G025800--Sobic010G229025 Sobic006G192900 Sobic006G192900 Sobic009G025800--Sobic006G192900 Sobic009G025800--Sobic003G334500 Sobic001G489400 Sobic001G489400 Sobic009G025800--Sobic001G489400 Sobic004G093800 Sobic004G093800 Sobic009G025800--Sobic004G093800 Sobic009G025800--Sobic008G142500 Sobic002G307500 Sobic002G307500 Sobic009G025800--Sobic002G307500
Octagon: transcription factors


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