Gene annotation
Transcriptome id Sobic.008G112000.1
Synonym Sb08g016600
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed
UniProt C5YP73
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF145
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G06620 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os03g48430.1 : 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed
MaizeGDB (Corn) Zm00025a054419 , Zm00025a054825 , Zm00025a039492
Brachypodium PNT73324 , KQJ95259 , KQK10912 , KQK10911 , KQJ82248
Barley HORVU3Hr1G093370.1 , HORVU4Hr1G089410.1 , HORVU5Hr1G125410.2 , HORVU5Hr1G125410.1 , HORVU1Hr1G018600.4 , HORVU1Hr1G018600.5 , HORVU1Hr1G018600.1 , HORVU1Hr1G018600.2 , HORVU1Hr1G018600.3 , HORVU2Hr1G005670.1 , HORVU4Hr1G000490.1 , HORVU3Hr1G090980.5 , HORVU1Hr1G020410.2 , HORVU1Hr1G020410.3 , HORVU1Hr1G020410.1 , HORVU1Hr1G020430.1 , HORVU7Hr1G019530.4 , HORVU7Hr1G019530.3 , HORVU7Hr1G019530.2 , HORVU7Hr1G019530.1 , HORVU3Hr1G090980.3 , HORVU3Hr1G090980.2 , HORVU3Hr1G090980.4 , HORVU3Hr1G090980.6 , HORVU2Hr1G005570.1
Wheat TraesCS3D02G401400 , TraesCS2B02G076400 , TraesCS2D02G036900 , TraesCS5A02G557100 , TraesCSU02G156500 , TraesCSU02G156500 , TraesCS3B02G439900 , TraesCS3A02G406200 , TraesCS7B02G001800 , TraesCSU02G030400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G116300 armadillo/beta-catenin repeat family protein, putative, expressed -
2 Sobic.004G251000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING finger protein, putative, expressed -
3 Sobic.003G196500 - -
4 Sobic.002G193000 EARLY flowering protein, putative, expressed -
5 Sobic.003G283000 expressed protein -
6 Sobic.005G196533 - -
7 Sobic.003G364400 Ferredoxin-6 (Zm)(PubMedID : 27208977)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
8 Sobic.001G491600 thioredoxin, putative, expressed -
9 Sobic.003G034100 expressed protein -
10 Sobic.001G347400 expressed protein -
11 Sobic.004G178800 OsFBL33 - F-box domain and LRR containing protein, expressed -
12 Sobic.007G060550 - -
13 Sobic.006G118150 - -
14 Sobic.001G334400 protein kinase, putative, expressed -
15 Sobic.001G492400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
16 Sobic.009G088300 SHR5-receptor-like kinase, putative, expressed -
17 Sobic.003G231200 - -
18 Sobic.008G037600 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
19 Sobic.001G515350 - -
20 Sobic.001G424650 - -


Gene co-expression network
sample Sobic008G112000 Sobic008G112000 Sobic010G116300 Sobic010G116300 Sobic008G112000--Sobic010G116300 Sobic004G251000 Sobic004G251000 Sobic008G112000--Sobic004G251000 Sobic003G196500 Sobic003G196500 Sobic008G112000--Sobic003G196500 Sobic002G193000 Sobic002G193000 Sobic008G112000--Sobic002G193000 Sobic003G283000 Sobic003G283000 Sobic008G112000--Sobic003G283000 Sobic005G196533 Sobic005G196533 Sobic008G112000--Sobic005G196533 Sobic003G364400 Sobic003G364400 Sobic008G112000--Sobic003G364400 Sobic001G491600 Sobic001G491600 Sobic008G112000--Sobic001G491600 Sobic003G034100 Sobic003G034100 Sobic008G112000--Sobic003G034100 Sobic010G116300--Sobic008G112000 Sobic006G022301 Sobic006G022301 Sobic010G116300--Sobic006G022301 Sobic010G116300--Sobic004G251000 Sobic007G152500 Sobic007G152500 Sobic010G116300--Sobic007G152500 Sobic003G231200 Sobic003G231200 Sobic010G116300--Sobic003G231200 Sobic001G446000 Sobic001G446000 Sobic010G116300--Sobic001G446000 Sobic010G116300--Sobic003G196500 Sobic004G090300 Sobic004G090300 Sobic010G116300--Sobic004G090300 Sobic004G187200 Sobic004G187200 Sobic010G116300--Sobic004G187200 Sobic006G064500 Sobic006G064500 Sobic004G251000--Sobic006G064500 Sobic004G251000--Sobic008G112000 Sobic002G259900 Sobic002G259900 Sobic004G251000--Sobic002G259900 Sobic003G443601 Sobic003G443601 Sobic004G251000--Sobic003G443601 Sobic007G138200 Sobic007G138200 Sobic004G251000--Sobic007G138200 Sobic004G251000--Sobic003G196500 Sobic006G151100 Sobic006G151100 Sobic004G251000--Sobic006G151100 Sobic004G251000--Sobic003G283000 Sobic010G196433 Sobic010G196433 Sobic004G251000--Sobic010G196433 Sobic010G079150 Sobic010G079150 Sobic003G196500--Sobic010G079150 Sobic006G110101 Sobic006G110101 Sobic003G196500--Sobic006G110101 Sobic001G369550 Sobic001G369550 Sobic003G196500--Sobic001G369550 Sobic008G052700 Sobic008G052700 Sobic003G196500--Sobic008G052700 Sobic008G043000 Sobic008G043000 Sobic003G196500--Sobic008G043000 Sobic009G225250 Sobic009G225250 Sobic003G196500--Sobic009G225250 Sobic003G063801 Sobic003G063801 Sobic003G196500--Sobic003G063801 Sobic002G250700 Sobic002G250700 Sobic003G196500--Sobic002G250700 Sobic009G163000 Sobic009G163000 Sobic003G196500--Sobic009G163000 Sobic003G247100 Sobic003G247100 Sobic002G193000--Sobic003G247100 Sobic002G059100 Sobic002G059100 Sobic002G193000--Sobic002G059100 Sobic010G207450 Sobic010G207450 Sobic002G193000--Sobic010G207450 Sobic001G297300 Sobic001G297300 Sobic002G193000--Sobic001G297300 Sobic001G059800 Sobic001G059800 Sobic002G193000--Sobic001G059800 Sobic002G018250 Sobic002G018250 Sobic002G193000--Sobic002G018250 Sobic002G193000--Sobic006G022301 Sobic007G091800 Sobic007G091800 Sobic002G193000--Sobic007G091800 Sobic002G320300 Sobic002G320300 Sobic002G193000--Sobic002G320300 Sobic008G153300 Sobic008G153300 Sobic003G283000--Sobic008G153300 Sobic010G015400 Sobic010G015400 Sobic003G283000--Sobic010G015400 Sobic007G224700 Sobic007G224700 Sobic003G283000--Sobic007G224700 Sobic004G273550 Sobic004G273550 Sobic003G283000--Sobic004G273550 Sobic002G215600 Sobic002G215600 Sobic003G283000--Sobic002G215600 Sobic009G079700 Sobic009G079700 Sobic003G283000--Sobic009G079700 Sobic004G167500 Sobic004G167500 Sobic003G283000--Sobic004G167500 Sobic010G210400 Sobic010G210400 Sobic003G283000--Sobic010G210400 Sobic010G187950 Sobic010G187950 Sobic003G283000--Sobic010G187950 Sobic004G358150 Sobic004G358150 Sobic005G196533--Sobic004G358150 Sobic010G129100 Sobic010G129100 Sobic005G196533--Sobic010G129100 Sobic002G086700 Sobic002G086700 Sobic005G196533--Sobic002G086700 Sobic009G088300 Sobic009G088300 Sobic005G196533--Sobic009G088300 Sobic003G410000 Sobic003G410000 Sobic005G196533--Sobic003G410000 Sobic003G375800 Sobic003G375800 Sobic005G196533--Sobic003G375800 Sobic001G441900 Sobic001G441900 Sobic005G196533--Sobic001G441900 Sobic002G244901 Sobic002G244901 Sobic005G196533--Sobic002G244901 Sobic001G498033 Sobic001G498033 Sobic005G196533--Sobic001G498033 Sobic008G094900 Sobic008G094900 Sobic003G364400--Sobic008G094900 Sobic009G166900 Sobic009G166900 Sobic003G364400--Sobic009G166900 Sobic003G364400--Sobic007G138200 Sobic001G349300 Sobic001G349300 Sobic003G364400--Sobic001G349300 Sobic001G515350 Sobic001G515350 Sobic003G364400--Sobic001G515350 Sobic008G141700 Sobic008G141700 Sobic003G364400--Sobic008G141700 Sobic003G364400--Sobic004G251000 Sobic004G095400 Sobic004G095400 Sobic003G364400--Sobic004G095400 Sobic003G364400--Sobic003G443601 Sobic003G155800 Sobic003G155800 Sobic001G491600--Sobic003G155800 Sobic003G362800 Sobic003G362800 Sobic001G491600--Sobic003G362800 Sobic004G181000 Sobic004G181000 Sobic001G491600--Sobic004G181000 Sobic001G113400 Sobic001G113400 Sobic001G491600--Sobic001G113400 Sobic002G001500 Sobic002G001500 Sobic001G491600--Sobic002G001500 Sobic009G160100 Sobic009G160100 Sobic001G491600--Sobic009G160100 Sobic009G208000 Sobic009G208000 Sobic001G491600--Sobic009G208000 Sobic002G206900 Sobic002G206900 Sobic001G491600--Sobic002G206900 Sobic008G103400 Sobic008G103400 Sobic001G491600--Sobic008G103400 Sobic002G051500 Sobic002G051500 Sobic003G034100--Sobic002G051500 Sobic008G037600 Sobic008G037600 Sobic003G034100--Sobic008G037600 Sobic005G068400 Sobic005G068400 Sobic003G034100--Sobic005G068400 Sobic010G249600 Sobic010G249600 Sobic003G034100--Sobic010G249600 Sobic002G296800 Sobic002G296800 Sobic003G034100--Sobic002G296800 Sobic007G210200 Sobic007G210200 Sobic003G034100--Sobic007G210200 Sobic007G107900 Sobic007G107900 Sobic003G034100--Sobic007G107900 Sobic005G135300 Sobic005G135300 Sobic003G034100--Sobic005G135300 Sobic009G240300 Sobic009G240300 Sobic003G034100--Sobic009G240300
Octagon: transcription factors


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