Gene annotation
Transcriptome id Sobic.008G178533.1
Synonym -
Functional annotation -
UniProt A0A1Z5R8B2
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF134
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G19940 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os07g02890.1 : OsFBX209 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ87316 , PNT75200 , PNT75201
Barley HORVU5Hr1G115520.19 , HORVU5Hr1G115520.18 , HORVU5Hr1G115520.13 , HORVU5Hr1G115520.15 , HORVU5Hr1G115520.14 , HORVU5Hr1G115520.8 , HORVU5Hr1G115520.5 , HORVU5Hr1G115520.1 , HORVU5Hr1G115520.2 , HORVU5Hr1G115520.20 , HORVU5Hr1G115520.21
Wheat TraesCS4B02G021400 , TraesCS4B02G021400 , TraesCS4B02G020500 , TraesCS4B02G020500 , TraesCS4B02G020500 , TraesCS4A02G215800 , TraesCS5B02G506400 , TraesCS4A02G366600 , TraesCS5B02G506400 , TraesCS5D02G506700 , TraesCS5D02G506700 , TraesCS5B02G506300 , TraesCS5B02G506300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
2 Sobic.001G534200 - -
3 Sobic.002G197700 -(PubMedID : 23108465)@ZOS4-05 - C2H2 zinc finger protein, expressed -
4 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
5 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
6 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
7 Sobic.006G248100 lipase, putative, expressed -
8 Sobic.002G211300 aminotransferase, classes I and II, domain containing protein, expressed K00814: GPT, alanine transaminase
9 Sobic.003G051400 cytochrome c oxidase polypeptide Vc, putative, expressed -
10 Sobic.008G159000 - -
11 Sobic.010G179300 - -
12 Sobic.002G184700 expressed protein -
13 Sobic.006G167700 oleosin, putative, expressed -
14 Sobic.010G125000 steroid nuclear receptor, ligand-binding, putative, expressed -
15 Sobic.009G037100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
16 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
17 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.003G437400 The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.001G344300 - -
20 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -


Gene co-expression network
sample Sobic008G178533 Sobic008G178533 Sobic002G393100 Sobic002G393100 Sobic008G178533--Sobic002G393100 Sobic001G534200 Sobic001G534200 Sobic008G178533--Sobic001G534200 Sobic002G197700 Sobic002G197700 Sobic008G178533--Sobic002G197700 Sobic001G208500 Sobic001G208500 Sobic008G178533--Sobic001G208500 Sobic004G164800 Sobic004G164800 Sobic008G178533--Sobic004G164800 Sobic003G372600 Sobic003G372600 Sobic008G178533--Sobic003G372600 Sobic006G248100 Sobic006G248100 Sobic008G178533--Sobic006G248100 Sobic002G211300 Sobic002G211300 Sobic008G178533--Sobic002G211300 Sobic003G051400 Sobic003G051400 Sobic008G178533--Sobic003G051400 Sobic002G393100--Sobic001G208500 Sobic002G393100--Sobic004G164800 Sobic002G393100--Sobic002G197700 Sobic002G393100--Sobic003G372600 Sobic009G037100 Sobic009G037100 Sobic002G393100--Sobic009G037100 Sobic008G159000 Sobic008G159000 Sobic002G393100--Sobic008G159000 Sobic002G393100--Sobic006G248100 Sobic002G393100--Sobic002G211300 Sobic001G380800 Sobic001G380800 Sobic002G393100--Sobic001G380800 Sobic006G167700 Sobic006G167700 Sobic001G534200--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic001G534200--Sobic002G184700 Sobic009G103800 Sobic009G103800 Sobic001G534200--Sobic009G103800 Sobic001G166900 Sobic001G166900 Sobic001G534200--Sobic001G166900 Sobic001G344300 Sobic001G344300 Sobic001G534200--Sobic001G344300 Sobic001G534200--Sobic003G372600 Sobic001G534200--Sobic001G208500 Sobic001G534200--Sobic002G211300 Sobic010G198900 Sobic010G198900 Sobic001G534200--Sobic010G198900 Sobic002G197700--Sobic008G159000 Sobic002G197700--Sobic002G211300 Sobic010G125000 Sobic010G125000 Sobic002G197700--Sobic010G125000 Sobic002G197700--Sobic002G393100 Sobic002G197700--Sobic004G164800 Sobic002G197700--Sobic001G208500 Sobic002G197700--Sobic003G372600 Sobic001G165600 Sobic001G165600 Sobic002G197700--Sobic001G165600 Sobic002G197700--Sobic009G037100 Sobic001G208500--Sobic003G372600 Sobic001G208500--Sobic002G393100 Sobic001G208500--Sobic004G164800 Sobic001G208500--Sobic002G211300 Sobic001G208500--Sobic008G159000 Sobic001G208500--Sobic002G184700 Sobic001G208500--Sobic009G037100 Sobic001G208500--Sobic006G248100 Sobic001G208500--Sobic002G197700 Sobic004G164800--Sobic009G037100 Sobic004G164800--Sobic002G393100 Sobic004G164800--Sobic001G208500 Sobic004G164800--Sobic003G372600 Sobic004G164800--Sobic002G211300 Sobic004G164800--Sobic008G159000 Sobic004G164800--Sobic002G197700 Sobic004G164800--Sobic010G125000 Sobic004G164800--Sobic006G248100 Sobic003G372600--Sobic001G208500 Sobic003G372600--Sobic002G211300 Sobic003G372600--Sobic002G184700 Sobic006G248000 Sobic006G248000 Sobic003G372600--Sobic006G248000 Sobic003G372600--Sobic004G164800 Sobic002G046000 Sobic002G046000 Sobic003G372600--Sobic002G046000 Sobic003G372600--Sobic010G125000 Sobic003G372600--Sobic006G167700 Sobic003G372600--Sobic009G037100 Sobic006G248100--Sobic001G208500 Sobic006G248100--Sobic002G393100 Sobic006G248100--Sobic003G051400 Sobic006G248100--Sobic003G372600 Sobic006G248100--Sobic004G164800 Sobic006G248100--Sobic008G159000 Sobic006G248100--Sobic009G037100 Sobic002G401400 Sobic002G401400 Sobic006G248100--Sobic002G401400 Sobic006G248100--Sobic002G184700 Sobic002G211300--Sobic010G125000 Sobic002G211300--Sobic003G372600 Sobic002G211300--Sobic006G248000 Sobic002G211300--Sobic006G167700 Sobic002G211300--Sobic001G208500 Sobic002G211300--Sobic001G165600 Sobic002G211300--Sobic002G197700 Sobic002G211300--Sobic004G164800 Sobic002G211300--Sobic008G159000 Sobic003G437400 Sobic003G437400 Sobic003G051400--Sobic003G437400 Sobic010G269950 Sobic010G269950 Sobic003G051400--Sobic010G269950 Sobic010G131500 Sobic010G131500 Sobic003G051400--Sobic010G131500 Sobic003G051400--Sobic001G380800 Sobic003G051400--Sobic006G248100 Sobic003G051400--Sobic002G393100 Sobic003G051400--Sobic001G208500 Sobic003G098800 Sobic003G098800 Sobic003G051400--Sobic003G098800 Sobic001G058800 Sobic001G058800 Sobic003G051400--Sobic001G058800
Octagon: transcription factors


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