Gene annotation
Transcriptome id Sobic.009G016700.1
Synonym GAPC2, GAPC-2, Sb09g001600
Functional annotation glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
UniProt A0A1B6P664
Pfam PF02800 PF00044
Panther DB PTHR10836:SF59 PTHR10836
NCBI CDD KOG0657; Glyceraldehyde 3-phosphate dehydrogenase
KEGG Orthology K00134; GAPDH, glyceraldehyde 3-phosphate dehydrogenase
Gene Ontology GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT1G13440 : glyceraldehyde-3-phosphate dehydrogenase C2
RAP-DB (Rice) LOC_Os04g40950.1 : glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a031861 , Zm00025a021282 , Zm00025a011792
Brachypodium KQJ94916 , KQJ94926
Barley HORVU6Hr1G054520.10 , HORVU6Hr1G054520.11 , HORVU6Hr1G054520.12 , HORVU6Hr1G054520.13 , HORVU7Hr1G074690.3 , HORVU7Hr1G074690.2 , HORVU7Hr1G074690.1 , HORVU7Hr1G074690.7 , HORVU7Hr1G074690.6 , HORVU7Hr1G074690.5 , HORVU7Hr1G074690.4 , HORVU7Hr1G074690.9 , HORVU7Hr1G074690.8 , HORVU6Hr1G054520.8 , HORVU6Hr1G054520.9 , HORVU6Hr1G054520.6 , HORVU6Hr1G054520.7 , HORVU6Hr1G054520.4 , HORVU6Hr1G054520.5 , HORVU6Hr1G054520.2 , HORVU6Hr1G054520.3 , HORVU6Hr1G054520.1
Wheat TraesCS7B02G213300 , TraesCS7D02G309500 , TraesCS6A02G213700 , TraesCS7A02G313100 , TraesCS7A02G313100 , TraesCS7A02G313100
Populus PNT01236 , PNT01237 , PNT01234 , PNT01235 , PNT01238 , PNT58052 , PNT58053 , PNT25311 , PNT25310 , PNT25308 , PNT25309 , PNT25307


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G093600 myosin, putative, expressed K10357: myosin V
2 Sobic.008G028100 pollen allergen, putative, expressed -
3 Sobic.001G539700 expansin precursor, putative, expressed -
4 Sobic.002G002600 la domain containing protein, expressed -
5 Sobic.007G222400 - -
6 Sobic.009G096700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
7 Sobic.008G028300 pollen allergen, putative, expressed -
8 Sobic.008G027800 pollen allergen, putative, expressed -
9 Sobic.001G002200 myosin, putative, expressed K10357: myosin V
10 Sobic.009G089532 - -
11 Sobic.008G028200 pollen allergen, putative, expressed -
12 Sobic.002G140500 POEI23 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
13 Sobic.004G166100 pollen allergen Cyn d 23, putative, expressed -
14 Sobic.004G024000 OsCML11 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
15 Sobic.003G127200 phosphatidylinositol kinase, putative, expressed -
16 Sobic.010G161400 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
17 Sobic.009G098900 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
18 Sobic.001G348600 patatin, putative, expressed -
19 Sobic.006G171500 ZOS4-09 - C2H2 zinc finger protein, expressed -
20 Sobic.004G251900 tetraspanin family protein, putative, expressed -


Gene co-expression network
sample Sobic009G016700 Sobic009G016700 Sobic010G093600 Sobic010G093600 Sobic009G016700--Sobic010G093600 Sobic008G028100 Sobic008G028100 Sobic009G016700--Sobic008G028100 Sobic001G539700 Sobic001G539700 Sobic009G016700--Sobic001G539700 Sobic002G002600 Sobic002G002600 Sobic009G016700--Sobic002G002600 Sobic007G222400 Sobic007G222400 Sobic009G016700--Sobic007G222400 Sobic009G096700 Sobic009G096700 Sobic009G016700--Sobic009G096700 Sobic008G028300 Sobic008G028300 Sobic009G016700--Sobic008G028300 Sobic008G027800 Sobic008G027800 Sobic009G016700--Sobic008G027800 Sobic001G002200 Sobic001G002200 Sobic009G016700--Sobic001G002200 Sobic010G093600--Sobic009G096700 Sobic010G093600--Sobic009G016700 Sobic010G093600--Sobic008G028100 Sobic010G093600--Sobic008G027800 Sobic010G093600--Sobic001G539700 Sobic010G093600--Sobic001G002200 Sobic010G093600--Sobic002G002600 Sobic008G028200 Sobic008G028200 Sobic010G093600--Sobic008G028200 Sobic010G093600--Sobic008G028300 Sobic008G028100--Sobic001G539700 Sobic009G089532 Sobic009G089532 Sobic008G028100--Sobic009G089532 Sobic008G028100--Sobic002G002600 Sobic008G028100--Sobic009G016700 Sobic008G028100--Sobic010G093600 Sobic008G028100--Sobic009G096700 Sobic008G028100--Sobic008G028300 Sobic008G028100--Sobic007G222400 Sobic009G098900 Sobic009G098900 Sobic008G028100--Sobic009G098900 Sobic001G539700--Sobic008G028100 Sobic001G539700--Sobic009G089532 Sobic001G539700--Sobic002G002600 Sobic001G539700--Sobic009G016700 Sobic001G539700--Sobic010G093600 Sobic001G539700--Sobic009G096700 Sobic001G539700--Sobic008G028300 Sobic001G539700--Sobic009G098900 Sobic001G539700--Sobic007G222400 Sobic002G002600--Sobic008G028300 Sobic002G002600--Sobic001G539700 Sobic002G002600--Sobic008G028100 Sobic002G002600--Sobic009G089532 Sobic010G161400 Sobic010G161400 Sobic002G002600--Sobic010G161400 Sobic002G002600--Sobic009G016700 Sobic002G002600--Sobic010G093600 Sobic002G002600--Sobic009G096700 Sobic003G127200 Sobic003G127200 Sobic002G002600--Sobic003G127200 Sobic007G222400--Sobic009G016700 Sobic007G222400--Sobic001G539700 Sobic007G222400--Sobic008G028100 Sobic007G222400--Sobic010G093600 Sobic007G222400--Sobic008G028300 Sobic004G166100 Sobic004G166100 Sobic007G222400--Sobic004G166100 Sobic007G222400--Sobic002G002600 Sobic004G024000 Sobic004G024000 Sobic007G222400--Sobic004G024000 Sobic007G222400--Sobic009G096700 Sobic009G096700--Sobic010G093600 Sobic009G096700--Sobic008G028100 Sobic009G096700--Sobic009G089532 Sobic009G096700--Sobic001G539700 Sobic009G096700--Sobic008G027800 Sobic009G096700--Sobic009G016700 Sobic009G096700--Sobic002G002600 Sobic009G096700--Sobic001G002200 Sobic009G096700--Sobic008G028300 Sobic008G028300--Sobic002G002600 Sobic008G028300--Sobic008G028100 Sobic008G028300--Sobic001G539700 Sobic008G028300--Sobic001G002200 Sobic008G028300--Sobic010G161400 Sobic008G028300--Sobic009G016700 Sobic008G028300--Sobic010G093600 Sobic008G028300--Sobic003G127200 Sobic008G028300--Sobic004G166100 Sobic008G027800--Sobic010G093600 Sobic008G027800--Sobic001G002200 Sobic008G027800--Sobic009G096700 Sobic008G027800--Sobic008G028200 Sobic008G027800--Sobic009G016700 Sobic008G027800--Sobic008G028100 Sobic008G027800--Sobic008G028300 Sobic002G140500 Sobic002G140500 Sobic008G027800--Sobic002G140500 Sobic008G027800--Sobic002G002600 Sobic001G002200--Sobic008G027800 Sobic001G002200--Sobic010G093600 Sobic001G002200--Sobic008G028300 Sobic001G002200--Sobic002G140500 Sobic001G228000 Sobic001G228000 Sobic001G002200--Sobic001G228000 Sobic001G002200--Sobic002G002600 Sobic001G002200--Sobic009G096700 Sobic001G002200--Sobic009G016700 Sobic001G002200--Sobic008G028200
Octagon: transcription factors


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