Gene annotation
Transcriptome id Sobic.010G161400.1
Synonym Sb10g021590
Functional annotation polygalacturonase, putative, expressed
UniProt C5Z464
Pfam PF12708
Panther DB PTHR31375 PTHR31375:SF48
NCBI CDD -
KEGG Orthology K01213; galacturan 1,4-alpha-galacturonidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15450 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os06g35320.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a042146 , Zm00025a042142 , Zm00025a042143 , Zm00025a019627 , Zm00025a058207 , Zm00025a034655 , Zm00025a042138 , Zm00025a042139 , Zm00025a042132 , Zm00025a042131 , Zm00025a042137 , Zm00025a042136 , Zm00025a042153 , Zm00025a042152 , Zm00025a042346 , Zm00025a058214 , Zm00025a044423 , Zm00025a019631 , Zm00025a026482
Brachypodium KQJ84052 , KQK17686 , KQK17684 , KQK04485 , KQK18286
Barley HORVU1Hr1G079170.35 , HORVU1Hr1G079170.34 , HORVU1Hr1G079170.37 , HORVU1Hr1G079170.36 , HORVU1Hr1G079170.31 , HORVU1Hr1G079170.30 , HORVU1Hr1G079170.33 , HORVU1Hr1G079170.32 , HORVU1Hr1G079170.39 , HORVU6Hr1G015390.2 , HORVU6Hr1G015390.3 , HORVU6Hr1G015390.1 , HORVU6Hr1G015390.6 , HORVU6Hr1G015390.4 , HORVU6Hr1G015390.5 , HORVU1Hr1G079170.28 , HORVU1Hr1G079170.29 , HORVU1Hr1G079170.22 , HORVU1Hr1G079170.23 , HORVU1Hr1G079170.20 , HORVU1Hr1G079170.21 , HORVU1Hr1G079170.26 , HORVU1Hr1G079170.27 , HORVU1Hr1G079170.24 , HORVU1Hr1G079170.25 , HORVU1Hr1G079170.56 , HORVU1Hr1G079170.55 , HORVU1Hr1G079170.54 , HORVU1Hr1G079170.53 , HORVU1Hr1G079170.52 , HORVU1Hr1G079170.51 , HORVU1Hr1G079170.50 , HORVU1Hr1G079170.48 , HORVU1Hr1G079170.49 , HORVU1Hr1G079170.44 , HORVU1Hr1G079170.45 , HORVU1Hr1G079170.46 , HORVU1Hr1G079170.47 , HORVU1Hr1G079170.40 , HORVU1Hr1G079170.41 , HORVU1Hr1G079170.42 , HORVU1Hr1G079170.43 , HORVU7Hr1G094750.1 , HORVU7Hr1G094750.2
Wheat TraesCSU02G113500 , TraesCS7D02G397900 , TraesCS7B02G304500 , TraesCS6B02G118000 , TraesCS6B02G118000 , TraesCS2B02G423300 , TraesCS4A02G229600 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS7A02G404900 , TraesCS7A02G404700 , TraesCS6A02G084500 , TraesCS7D02G398900 , TraesCS7A02G405000 , TraesCS2A02G405100 , TraesCS2D02G402100 , TraesCS7B02G304100 , TraesCS7D02G399000 , TraesCS7B02G304400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G161400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G186900 SCP-like extracellular protein, expressed -
2 Sobic.009G098900 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
3 Sobic.003G173800 polygalacturonase, putative, expressed -
4 Sobic.002G002600 la domain containing protein, expressed -
5 Sobic.007G100800 CSLD3 - cellulose synthase-like family D, expressed -
6 Sobic.005G010000 expressed protein -
7 Sobic.008G028300 pollen allergen, putative, expressed -
8 Sobic.003G061700 - -
9 Sobic.002G106800 expressed protein -
10 Sobic.001G539700 expansin precursor, putative, expressed -
11 Sobic.008G028100 pollen allergen, putative, expressed -
12 Sobic.009G089532 - -
13 Sobic.003G127200 phosphatidylinositol kinase, putative, expressed -
14 Sobic.004G025500 - -
15 Sobic.004G137200 fasciclin-like arabinogalactan precursor protein, putative, expressed -
16 Sobic.004G166100 pollen allergen Cyn d 23, putative, expressed -
17 Sobic.009G016700 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
18 Sobic.003G438500 THION25 - Plant thionin family protein precursor, expressed -
19 Sobic.004G251900 tetraspanin family protein, putative, expressed -
20 Sobic.002G091200 pectinesterase inhibitor domain containing protein, expressed -


Gene co-expression network
sample Sobic010G161400 Sobic010G161400 Sobic008G186900 Sobic008G186900 Sobic010G161400--Sobic008G186900 Sobic009G098900 Sobic009G098900 Sobic010G161400--Sobic009G098900 Sobic003G173800 Sobic003G173800 Sobic010G161400--Sobic003G173800 Sobic002G002600 Sobic002G002600 Sobic010G161400--Sobic002G002600 Sobic007G100800 Sobic007G100800 Sobic010G161400--Sobic007G100800 Sobic005G010000 Sobic005G010000 Sobic010G161400--Sobic005G010000 Sobic008G028300 Sobic008G028300 Sobic010G161400--Sobic008G028300 Sobic003G061700 Sobic003G061700 Sobic010G161400--Sobic003G061700 Sobic002G106800 Sobic002G106800 Sobic010G161400--Sobic002G106800 Sobic008G186900--Sobic007G100800 Sobic008G186900--Sobic010G161400 Sobic008G186900--Sobic003G061700 Sobic008G186900--Sobic005G010000 Sobic008G186900--Sobic003G173800 Sobic008G186900--Sobic002G002600 Sobic003G127200 Sobic003G127200 Sobic008G186900--Sobic003G127200 Sobic008G186900--Sobic009G098900 Sobic008G186900--Sobic008G028300 Sobic009G098900--Sobic003G173800 Sobic004G025500 Sobic004G025500 Sobic009G098900--Sobic004G025500 Sobic009G098900--Sobic010G161400 Sobic009G098900--Sobic002G106800 Sobic009G089532 Sobic009G089532 Sobic009G098900--Sobic009G089532 Sobic004G137200 Sobic004G137200 Sobic009G098900--Sobic004G137200 Sobic009G098900--Sobic005G010000 Sobic001G539700 Sobic001G539700 Sobic009G098900--Sobic001G539700 Sobic009G098900--Sobic002G002600 Sobic003G173800--Sobic005G010000 Sobic003G173800--Sobic002G106800 Sobic003G173800--Sobic009G098900 Sobic003G173800--Sobic010G161400 Sobic003G173800--Sobic008G186900 Sobic003G173800--Sobic004G137200 Sobic002G091200 Sobic002G091200 Sobic003G173800--Sobic002G091200 Sobic003G173800--Sobic007G100800 Sobic003G173800--Sobic003G061700 Sobic002G002600--Sobic008G028300 Sobic002G002600--Sobic001G539700 Sobic008G028100 Sobic008G028100 Sobic002G002600--Sobic008G028100 Sobic002G002600--Sobic009G089532 Sobic002G002600--Sobic010G161400 Sobic009G016700 Sobic009G016700 Sobic002G002600--Sobic009G016700 Sobic010G093600 Sobic010G093600 Sobic002G002600--Sobic010G093600 Sobic009G096700 Sobic009G096700 Sobic002G002600--Sobic009G096700 Sobic002G002600--Sobic003G127200 Sobic007G100800--Sobic003G061700 Sobic007G100800--Sobic008G186900 Sobic007G100800--Sobic005G010000 Sobic007G100800--Sobic010G161400 Sobic007G100800--Sobic003G127200 Sobic007G100800--Sobic003G173800 Sobic007G100800--Sobic002G002600 Sobic007G100800--Sobic009G098900 Sobic007G100800--Sobic008G028300 Sobic005G010000--Sobic003G173800 Sobic005G010000--Sobic002G106800 Sobic005G010000--Sobic007G100800 Sobic005G010000--Sobic003G061700 Sobic005G010000--Sobic008G186900 Sobic005G010000--Sobic010G161400 Sobic005G010000--Sobic009G098900 Sobic005G010000--Sobic004G137200 Sobic005G010000--Sobic002G091200 Sobic008G028300--Sobic002G002600 Sobic008G028300--Sobic008G028100 Sobic008G028300--Sobic001G539700 Sobic001G002200 Sobic001G002200 Sobic008G028300--Sobic001G002200 Sobic008G028300--Sobic010G161400 Sobic008G028300--Sobic009G016700 Sobic008G028300--Sobic010G093600 Sobic008G028300--Sobic003G127200 Sobic004G166100 Sobic004G166100 Sobic008G028300--Sobic004G166100 Sobic003G061700--Sobic007G100800 Sobic003G061700--Sobic008G186900 Sobic003G061700--Sobic005G010000 Sobic003G061700--Sobic010G161400 Sobic003G061700--Sobic003G173800 Sobic003G061700--Sobic003G127200 Sobic003G061700--Sobic002G002600 Sobic002G351500 Sobic002G351500 Sobic003G061700--Sobic002G351500 Sobic003G061700--Sobic009G098900 Sobic002G106800--Sobic003G173800 Sobic002G106800--Sobic005G010000 Sobic002G106800--Sobic009G098900 Sobic002G106800--Sobic002G091200 Sobic002G106800--Sobic004G137200 Sobic001G540000 Sobic001G540000 Sobic002G106800--Sobic001G540000 Sobic002G106800--Sobic010G161400 Sobic002G106800--Sobic004G025500 Sobic002G106800--Sobic008G186900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.