Gene annotation
Transcriptome id Sobic.009G089200.2,Sobic.009G089200.3
Synonym ATRHM1, ROL1, RHM1, Sb09g008220
Functional annotation NAD dependent epimerase/dehydratase family domain containing protein, expressed
UniProt A0A1B6P7F8 , C5YVA8
Pfam PF01073 PF04321
Panther DB PTHR10366 PTHR10366:SF385
NCBI CDD -
KEGG Orthology K12450; UDP-glucose 4,6-dehydratase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT1G78570 : rhamnose biosynthesis 1
RAP-DB (Rice) LOC_Os03g17000.3,LOC_Os03g17000.2 : NAD dependent epimerase/dehydratase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052743 , Zm00025a043219
Brachypodium KQJ94144 , KQJ94145 , PNT66221
Barley -
Wheat TraesCS5B02G023700 , TraesCS5B02G023700 , TraesCS5D02G032700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G065300 methyltransferase, putative, expressed -
2 Sobic.007G134260 - -
3 Sobic.007G103000 FGGY family of carbohydrate kinases, putative, expressed K00864: glpK, glycerol kinase
4 Sobic.003G114800 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
5 Sobic.003G232100 - -
6 Sobic.004G091000 pectate lyase precursor, putative, expressed K01728: pectate lyase
7 Sobic.005G122100 expressed protein -
8 Sobic.003G147700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.006G270800 EF hand family protein, putative, expressed -
10 Sobic.008G102850 - -
11 Sobic.009G090400 - -
12 Sobic.002G427500 pectinesterase, putative, expressed K01051: pectinesterase
13 Sobic.006G127800 armadillo/beta-catenin repeat family protein, putative, expressed -
14 Sobic.007G222200 - -
15 Sobic.005G000200 lipase, putative, expressed -
16 Sobic.003G009600 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
17 Sobic.005G214700 - -
18 Sobic.005G009700 expressed protein -
19 Sobic.010G190500 - -
20 Sobic.009G089000 ATCHX, putative, expressed -


Gene co-expression network
sample Sobic009G089200 Sobic009G089200 Sobic005G065300 Sobic005G065300 Sobic009G089200--Sobic005G065300 Sobic007G134260 Sobic007G134260 Sobic009G089200--Sobic007G134260 Sobic007G103000 Sobic007G103000 Sobic009G089200--Sobic007G103000 Sobic003G114800 Sobic003G114800 Sobic009G089200--Sobic003G114800 Sobic003G232100 Sobic003G232100 Sobic009G089200--Sobic003G232100 Sobic004G091000 Sobic004G091000 Sobic009G089200--Sobic004G091000 Sobic005G122100 Sobic005G122100 Sobic009G089200--Sobic005G122100 Sobic003G147700 Sobic003G147700 Sobic009G089200--Sobic003G147700 Sobic006G270800 Sobic006G270800 Sobic009G089200--Sobic006G270800 Sobic005G065300--Sobic009G089200 Sobic005G065300--Sobic007G103000 Sobic005G065300--Sobic007G134260 Sobic008G102850 Sobic008G102850 Sobic005G065300--Sobic008G102850 Sobic005G065300--Sobic003G114800 Sobic005G065300--Sobic004G091000 Sobic005G065300--Sobic005G122100 Sobic005G065300--Sobic003G147700 Sobic005G065300--Sobic003G232100 Sobic007G134260--Sobic007G103000 Sobic007G134260--Sobic005G122100 Sobic007G134260--Sobic004G091000 Sobic007G134260--Sobic003G232100 Sobic007G134260--Sobic003G114800 Sobic007G134260--Sobic003G147700 Sobic007G134260--Sobic006G270800 Sobic007G134260--Sobic008G102850 Sobic009G090400 Sobic009G090400 Sobic007G134260--Sobic009G090400 Sobic007G103000--Sobic007G134260 Sobic007G103000--Sobic005G122100 Sobic007G103000--Sobic004G091000 Sobic007G103000--Sobic003G232100 Sobic007G103000--Sobic003G147700 Sobic007G103000--Sobic003G114800 Sobic007G103000--Sobic008G102850 Sobic007G103000--Sobic006G270800 Sobic007G103000--Sobic009G090400 Sobic003G114800--Sobic004G091000 Sobic003G114800--Sobic003G147700 Sobic003G114800--Sobic007G134260 Sobic005G000200 Sobic005G000200 Sobic003G114800--Sobic005G000200 Sobic003G114800--Sobic007G103000 Sobic003G114800--Sobic003G232100 Sobic003G114800--Sobic006G270800 Sobic008G079200 Sobic008G079200 Sobic003G114800--Sobic008G079200 Sobic003G114800--Sobic005G122100 Sobic003G232100--Sobic007G134260 Sobic003G232100--Sobic006G270800 Sobic003G232100--Sobic007G103000 Sobic003G232100--Sobic005G122100 Sobic003G232100--Sobic004G091000 Sobic003G232100--Sobic003G114800 Sobic003G232100--Sobic003G147700 Sobic002G427500 Sobic002G427500 Sobic003G232100--Sobic002G427500 Sobic006G127800 Sobic006G127800 Sobic003G232100--Sobic006G127800 Sobic004G091000--Sobic003G114800 Sobic004G091000--Sobic007G134260 Sobic004G091000--Sobic007G103000 Sobic004G091000--Sobic003G232100 Sobic004G091000--Sobic003G147700 Sobic004G091000--Sobic005G000200 Sobic004G091000--Sobic006G270800 Sobic004G091000--Sobic005G122100 Sobic005G009700 Sobic005G009700 Sobic004G091000--Sobic005G009700 Sobic005G122100--Sobic009G090400 Sobic005G122100--Sobic007G103000 Sobic005G122100--Sobic007G134260 Sobic007G222200 Sobic007G222200 Sobic005G122100--Sobic007G222200 Sobic005G122100--Sobic006G270800 Sobic005G122100--Sobic003G232100 Sobic002G157900 Sobic002G157900 Sobic005G122100--Sobic002G157900 Sobic005G122100--Sobic003G147700 Sobic005G122100--Sobic002G427500 Sobic003G147700--Sobic003G114800 Sobic003G147700--Sobic006G270800 Sobic003G147700--Sobic007G103000 Sobic003G147700--Sobic007G134260 Sobic003G147700--Sobic002G427500 Sobic003G147700--Sobic004G091000 Sobic003G147700--Sobic006G127800 Sobic003G147700--Sobic005G122100 Sobic003G147700--Sobic003G232100 Sobic006G270800--Sobic002G427500 Sobic006G270800--Sobic006G127800 Sobic006G270800--Sobic003G147700 Sobic006G270800--Sobic003G232100 Sobic003G009600 Sobic003G009600 Sobic006G270800--Sobic003G009600 Sobic006G270800--Sobic005G122100 Sobic009G089000 Sobic009G089000 Sobic006G270800--Sobic009G089000 Sobic006G270800--Sobic003G114800 Sobic006G270800--Sobic009G090400
Octagon: transcription factors


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