Gene annotation
Transcriptome id Sobic.009G175800.1
Synonym Sb09g023630
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt C5YZU6
Pfam PF02362
Panther DB PTHR31391 PTHR31391:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G58280 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os05g40280.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044027
Brachypodium PNT71040 , PNT71041
Barley -
Wheat TraesCS1A02G302700 , TraesCS1D02G302100
Populus -


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cDNA sequences
Sobic.009G175800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G230600 expressed protein -
2 Sobic.004G242800 - -
3 Sobic.002G287600 expressed protein -
4 Sobic.008G072800 OsMADS33 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.004G299850 - -
6 Sobic.002G012100 cytokinin inducible protein, putative, expressed -
7 Sobic.001G167000 HEAT repeat family protein, putative, expressed K11492: NCAPG2, condensin-2 complex subunit G2
8 Sobic.004G342200 myb-like DNA-binding domain containing protein, expressed -
9 Sobic.006G268900 "STKc_IRAK, catalytic domain of the serine/threonine kinases"(PubMedID : 29491869)@expressed protein -
10 Sobic.008G104400 ZOS12-05 - C2H2 zinc finger protein, expressed K09506: DnaJ homolog subfamily A member 5
11 Sobic.008G067000 syntaxin-related protein KNOLLE, putative, expressed K08486: syntaxin 1B/2/3
12 Sobic.010G100700 HEAT repeat family protein, putative, expressed -
13 Sobic.002G324801 - -
14 Sobic.004G227700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase, putative, expressed -
15 Sobic.008G187500 bZIP transcription factor domain containing protein, expressed -
16 Sobic.006G134300 - -
17 Sobic.004G206600 osFTL5 FT-Like5 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
18 Sobic.008G142200 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
19 Sobic.007G141900 resistance protein SlVe1 precursor, putative, expressed -
20 Sobic.003G063400 glycosyltransferase family 43 protein, putative, expressed -


Gene co-expression network
sample Sobic009G175800 Sobic009G175800 Sobic009G230600 Sobic009G230600 Sobic009G175800--Sobic009G230600 Sobic004G242800 Sobic004G242800 Sobic009G175800--Sobic004G242800 Sobic002G287600 Sobic002G287600 Sobic009G175800--Sobic002G287600 Sobic008G072800 Sobic008G072800 Sobic009G175800--Sobic008G072800 Sobic004G299850 Sobic004G299850 Sobic009G175800--Sobic004G299850 Sobic002G012100 Sobic002G012100 Sobic009G175800--Sobic002G012100 Sobic001G167000 Sobic001G167000 Sobic009G175800--Sobic001G167000 Sobic004G342200 Sobic004G342200 Sobic009G175800--Sobic004G342200 Sobic006G268900 Sobic006G268900 Sobic009G175800--Sobic006G268900 Sobic009G230600--Sobic009G175800 Sobic009G230600--Sobic004G342200 Sobic009G230600--Sobic004G299850 Sobic009G230600--Sobic002G287600 Sobic008G067000 Sobic008G067000 Sobic009G230600--Sobic008G067000 Sobic009G230600--Sobic001G167000 Sobic003G096950 Sobic003G096950 Sobic009G230600--Sobic003G096950 Sobic003G375400 Sobic003G375400 Sobic009G230600--Sobic003G375400 Sobic001G270800 Sobic001G270800 Sobic009G230600--Sobic001G270800 Sobic004G242800--Sobic001G167000 Sobic004G242800--Sobic002G012100 Sobic004G206600 Sobic004G206600 Sobic004G242800--Sobic004G206600 Sobic010G196466 Sobic010G196466 Sobic004G242800--Sobic010G196466 Sobic004G242800--Sobic009G175800 Sobic004G242800--Sobic001G270800 Sobic003G330350 Sobic003G330350 Sobic004G242800--Sobic003G330350 Sobic009G102250 Sobic009G102250 Sobic004G242800--Sobic009G102250 Sobic009G087540 Sobic009G087540 Sobic004G242800--Sobic009G087540 Sobic002G287600--Sobic008G072800 Sobic002G287600--Sobic004G342200 Sobic002G287600--Sobic009G175800 Sobic008G190600 Sobic008G190600 Sobic002G287600--Sobic008G190600 Sobic001G191500 Sobic001G191500 Sobic002G287600--Sobic001G191500 Sobic008G083100 Sobic008G083100 Sobic002G287600--Sobic008G083100 Sobic008G142200 Sobic008G142200 Sobic002G287600--Sobic008G142200 Sobic002G209450 Sobic002G209450 Sobic002G287600--Sobic002G209450 Sobic002G413700 Sobic002G413700 Sobic002G287600--Sobic002G413700 Sobic007G141900 Sobic007G141900 Sobic008G072800--Sobic007G141900 Sobic010G100700 Sobic010G100700 Sobic008G072800--Sobic010G100700 Sobic008G072800--Sobic008G142200 Sobic006G072701 Sobic006G072701 Sobic008G072800--Sobic006G072701 Sobic008G072800--Sobic002G012100 Sobic003G023450 Sobic003G023450 Sobic008G072800--Sobic003G023450 Sobic002G324801 Sobic002G324801 Sobic008G072800--Sobic002G324801 Sobic008G132500 Sobic008G132500 Sobic008G072800--Sobic008G132500 Sobic008G072800--Sobic001G191500 Sobic009G029100 Sobic009G029100 Sobic004G299850--Sobic009G029100 Sobic004G299850--Sobic001G167000 Sobic003G412500 Sobic003G412500 Sobic004G299850--Sobic003G412500 Sobic001G011600 Sobic001G011600 Sobic004G299850--Sobic001G011600 Sobic004G299850--Sobic003G330350 Sobic006G258600 Sobic006G258600 Sobic004G299850--Sobic006G258600 Sobic004G299850--Sobic002G012100 Sobic006G130100 Sobic006G130100 Sobic004G299850--Sobic006G130100 Sobic006G131700 Sobic006G131700 Sobic004G299850--Sobic006G131700 Sobic002G012100--Sobic007G141900 Sobic002G012100--Sobic001G167000 Sobic002G012100--Sobic008G072800 Sobic002G012100--Sobic004G206600 Sobic002G012100--Sobic008G067000 Sobic002G012100--Sobic004G242800 Sobic002G012100--Sobic010G196466 Sobic009G064300 Sobic009G064300 Sobic002G012100--Sobic009G064300 Sobic002G012100--Sobic003G023450 Sobic001G167000--Sobic002G012100 Sobic001G167000--Sobic004G242800 Sobic001G167000--Sobic001G270800 Sobic001G182800 Sobic001G182800 Sobic001G167000--Sobic001G182800 Sobic001G167000--Sobic003G330350 Sobic001G167000--Sobic004G299850 Sobic003G064901 Sobic003G064901 Sobic001G167000--Sobic003G064901 Sobic001G167000--Sobic010G196466 Sobic001G167000--Sobic009G102250 Sobic004G342200--Sobic002G287600 Sobic004G342200--Sobic009G230600 Sobic004G342200--Sobic009G175800 Sobic004G342200--Sobic004G299850 Sobic003G386400 Sobic003G386400 Sobic004G342200--Sobic003G386400 Sobic004G342200--Sobic008G067000 Sobic008G104400 Sobic008G104400 Sobic004G342200--Sobic008G104400 Sobic004G342200--Sobic003G096950 Sobic004G342200--Sobic002G012100 Sobic009G094200 Sobic009G094200 Sobic006G268900--Sobic009G094200 Sobic004G227700 Sobic004G227700 Sobic006G268900--Sobic004G227700 Sobic004G250400 Sobic004G250400 Sobic006G268900--Sobic004G250400 Sobic006G268900--Sobic008G142200 Sobic003G063400 Sobic003G063400 Sobic006G268900--Sobic003G063400 Sobic006G268900--Sobic008G072800 Sobic006G268900--Sobic010G100700 Sobic004G033650 Sobic004G033650 Sobic006G268900--Sobic004G033650 Sobic006G268900--Sobic007G141900
Octagon: transcription factors


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