Gene annotation
Transcriptome id Sobic.009G191800.4,Sobic.009G191800.3,Sobic.009G191800.2,Sobic.009G191800.5,Sobic.009G191800.1
Synonym Sb09g025070, MTSSB
Functional annotation single-stranded DNA-binding protein, putative, expressed
UniProt A0A1B6P9G0
Pfam PF00436
Panther DB PTHR10302 PTHR10302:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003697; single-stranded DNA binding GO:0006260DNA replication


Orthologs (automatic annotation)
TAIR AT4G11060 : mitochondrially targeted single-stranded DNA binding protein
RAP-DB (Rice) LOC_Os05g43440.1,LOC_Os05g43440.2 : single-stranded DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a044180
Brachypodium KQK09988 , KQK09987 , KQK09986 , KQK09985 , PNT72950
Barley HORVU3Hr1G075580.1 , HORVU3Hr1G075580.2 , HORVU1Hr1G077860.3 , HORVU1Hr1G077860.2 , HORVU1Hr1G077860.1 , HORVU1Hr1G077860.4
Wheat TraesCS1D02G329700 , TraesCS1D02G329700 , TraesCS3A02G322900 , TraesCS3D02G308600 , TraesCS3D02G308600 , TraesCS3D02G308600 , TraesCS3A02G322900 , TraesCS3B02G342800 , TraesCS3B02G342800 , TraesCS1A02G327700
Populus -


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cDNA sequences
Sobic.009G191800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
2 Sobic.004G013500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00963: UGP2, galU, UTP--glucose-1-phosphate uridylyltransferase
3 Sobic.001G130900 expressed protein -
4 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
5 Sobic.010G114500 tetraspanin family protein, putative, expressed -
6 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
7 Sobic.007G122300 - -
8 Sobic.002G276700 protein of unknown function containing protein, expressed -
9 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
10 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
11 Sobic.002G387100 X8 domain containing protein, expressed -
12 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
13 Sobic.003G200501 - K11252: histone H2B
14 Sobic.001G525000 polygalacturonase, putative, expressed -
15 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
16 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
17 Sobic.003G120400 expressed protein -
18 Sobic.003G367401 - -
19 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
20 Sobic.003G368150 - -


Gene co-expression network
sample Sobic009G191800 Sobic009G191800 Sobic001G441800 Sobic001G441800 Sobic009G191800--Sobic001G441800 Sobic004G013500 Sobic004G013500 Sobic009G191800--Sobic004G013500 Sobic001G130900 Sobic001G130900 Sobic009G191800--Sobic001G130900 Sobic007G149600 Sobic007G149600 Sobic009G191800--Sobic007G149600 Sobic010G114500 Sobic010G114500 Sobic009G191800--Sobic010G114500 Sobic003G350100 Sobic003G350100 Sobic009G191800--Sobic003G350100 Sobic007G122300 Sobic007G122300 Sobic009G191800--Sobic007G122300 Sobic002G276700 Sobic002G276700 Sobic009G191800--Sobic002G276700 Sobic004G265400 Sobic004G265400 Sobic009G191800--Sobic004G265400 Sobic003G368150 Sobic003G368150 Sobic001G441800--Sobic003G368150 Sobic002G387100 Sobic002G387100 Sobic001G441800--Sobic002G387100 Sobic001G441800--Sobic007G122300 Sobic002G284800 Sobic002G284800 Sobic001G441800--Sobic002G284800 Sobic002G430200 Sobic002G430200 Sobic001G441800--Sobic002G430200 Sobic008G133100 Sobic008G133100 Sobic001G441800--Sobic008G133100 Sobic004G239000 Sobic004G239000 Sobic001G441800--Sobic004G239000 Sobic003G099500 Sobic003G099500 Sobic001G441800--Sobic003G099500 Sobic001G255700 Sobic001G255700 Sobic001G441800--Sobic001G255700 Sobic004G013500--Sobic009G191800 Sobic009G031700 Sobic009G031700 Sobic004G013500--Sobic009G031700 Sobic004G188201 Sobic004G188201 Sobic004G013500--Sobic004G188201 Sobic003G056400 Sobic003G056400 Sobic004G013500--Sobic003G056400 Sobic004G013500--Sobic010G114500 Sobic002G254600 Sobic002G254600 Sobic004G013500--Sobic002G254600 Sobic004G013500--Sobic001G441800 Sobic004G013500--Sobic003G350100 Sobic001G193400 Sobic001G193400 Sobic004G013500--Sobic001G193400 Sobic003G120400 Sobic003G120400 Sobic001G130900--Sobic003G120400 Sobic007G093400 Sobic007G093400 Sobic001G130900--Sobic007G093400 Sobic007G175701 Sobic007G175701 Sobic001G130900--Sobic007G175701 Sobic001G525000 Sobic001G525000 Sobic001G130900--Sobic001G525000 Sobic003G200501 Sobic003G200501 Sobic001G130900--Sobic003G200501 Sobic002G320900 Sobic002G320900 Sobic001G130900--Sobic002G320900 Sobic003G367401 Sobic003G367401 Sobic001G130900--Sobic003G367401 Sobic002G210200 Sobic002G210200 Sobic001G130900--Sobic002G210200 Sobic001G130900--Sobic007G122300 Sobic007G149600--Sobic004G265400 Sobic007G221800 Sobic007G221800 Sobic007G149600--Sobic007G221800 Sobic003G067300 Sobic003G067300 Sobic007G149600--Sobic003G067300 Sobic007G149600--Sobic003G200501 Sobic007G149600--Sobic002G210200 Sobic007G149600--Sobic003G350100 Sobic003G067500 Sobic003G067500 Sobic007G149600--Sobic003G067500 Sobic002G284901 Sobic002G284901 Sobic007G149600--Sobic002G284901 Sobic007G149600--Sobic001G193400 Sobic009G031100 Sobic009G031100 Sobic010G114500--Sobic009G031100 Sobic007G001300 Sobic007G001300 Sobic010G114500--Sobic007G001300 Sobic002G156300 Sobic002G156300 Sobic010G114500--Sobic002G156300 Sobic003G109400 Sobic003G109400 Sobic010G114500--Sobic003G109400 Sobic010G224800 Sobic010G224800 Sobic010G114500--Sobic010G224800 Sobic010G114400 Sobic010G114400 Sobic010G114500--Sobic010G114400 Sobic003G105300 Sobic003G105300 Sobic010G114500--Sobic003G105300 Sobic004G197300 Sobic004G197300 Sobic010G114500--Sobic004G197300 Sobic009G163500 Sobic009G163500 Sobic010G114500--Sobic009G163500 Sobic003G350100--Sobic003G067300 Sobic003G350100--Sobic004G265400 Sobic003G350100--Sobic007G149600 Sobic003G350100--Sobic001G193400 Sobic003G350100--Sobic003G067500 Sobic003G350100--Sobic003G200501 Sobic003G350100--Sobic002G210200 Sobic003G350100--Sobic002G387100 Sobic003G350100--Sobic008G133100 Sobic007G122300--Sobic002G430200 Sobic007G122300--Sobic002G387100 Sobic007G122300--Sobic003G368150 Sobic007G122300--Sobic004G239000 Sobic007G122300--Sobic003G099500 Sobic007G122300--Sobic003G367401 Sobic008G131800 Sobic008G131800 Sobic007G122300--Sobic008G131800 Sobic007G122300--Sobic002G284800 Sobic007G122300--Sobic001G441800 Sobic002G276700--Sobic001G441800 Sobic002G276700--Sobic003G350100 Sobic002G276700--Sobic008G133100 Sobic002G276700--Sobic003G067300 Sobic002G276700--Sobic002G387100 Sobic002G276700--Sobic002G284800 Sobic002G276700--Sobic002G430200 Sobic002G276700--Sobic001G193400 Sobic002G276700--Sobic007G122300 Sobic004G265400--Sobic007G149600 Sobic004G265400--Sobic007G221800 Sobic004G265400--Sobic003G350100 Sobic004G265400--Sobic003G067300 Sobic004G265400--Sobic003G067500 Sobic004G265400--Sobic003G200501 Sobic004G265400--Sobic002G210200 Sobic004G265400--Sobic001G193400 Sobic002G059200 Sobic002G059200 Sobic004G265400--Sobic002G059200
Octagon: transcription factors


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