Gene annotation
Transcriptome id Sobic.009G216300.1
Synonym Sb09g027160
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
polygalacturonase, putative, expressed
UniProt A0A1B6P9M7
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT1G70500 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os05g46520.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a044424
Brachypodium -
Barley HORVU1Hr1G079170.37 , HORVU1Hr1G079170.31 , HORVU1Hr1G079170.30 , HORVU1Hr1G079170.33 , HORVU1Hr1G079170.39 , HORVU1Hr1G079170.29 , HORVU1Hr1G079170.22 , HORVU1Hr1G079170.20 , HORVU1Hr1G079170.24 , HORVU1Hr1G079170.25 , HORVU1Hr1G079170.53 , HORVU1Hr1G079170.52 , HORVU1Hr1G079170.51 , HORVU1Hr1G079170.45 , HORVU1Hr1G079170.46 , HORVU1Hr1G079170.40 , HORVU1Hr1G079170.55
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.009G216300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G142500 expressed protein -
2 Sobic.001G518000 protein kinase, putative, expressed -
3 Sobic.009G128800 expressed protein -
4 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
5 Sobic.010G165100 expressed protein -
6 Sobic.009G151100 serine/threonine-protein kinase, putative, expressed -
7 Sobic.010G211800 TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
8 Sobic.001G522300 leucine-rich repeat transmembrane protein kinase, putative, expressed -
9 Sobic.002G045200 protein kinase, putative, expressed -
10 Sobic.001G298800 ternary complex factor MIP1, putative, expressed -
11 Sobic.001G389600 expressed protein -
12 Sobic.006G241800 receptor kinase, putative, expressed -
13 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
14 Sobic.001G286400 - -
15 Sobic.002G311000 "Receptor-like kinase(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659859)@leucine-rich repeat family protein, putative, expressed -
16 Sobic.010G078300 leaf senescence related protein, putative, expressed -
17 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
18 Sobic.007G000700 choline transporter-related, putative, expressed K15377: solute carrier family 44 (choline transporter-like protein), member 2/4/5
19 Sobic.002G246000 expressed protein -
20 Sobic.002G202500 spotted leaf 11, putative, expressed -


Gene co-expression network
sample Sobic009G216300 Sobic009G216300 Sobic002G142500 Sobic002G142500 Sobic009G216300--Sobic002G142500 Sobic001G518000 Sobic001G518000 Sobic009G216300--Sobic001G518000 Sobic009G128800 Sobic009G128800 Sobic009G216300--Sobic009G128800 Sobic009G235700 Sobic009G235700 Sobic009G216300--Sobic009G235700 Sobic010G165100 Sobic010G165100 Sobic009G216300--Sobic010G165100 Sobic009G151100 Sobic009G151100 Sobic009G216300--Sobic009G151100 Sobic010G211800 Sobic010G211800 Sobic009G216300--Sobic010G211800 Sobic001G522300 Sobic001G522300 Sobic009G216300--Sobic001G522300 Sobic002G045200 Sobic002G045200 Sobic009G216300--Sobic002G045200 Sobic006G274866 Sobic006G274866 Sobic002G142500--Sobic006G274866 Sobic006G257200 Sobic006G257200 Sobic002G142500--Sobic006G257200 Sobic001G389600 Sobic001G389600 Sobic002G142500--Sobic001G389600 Sobic002G142500--Sobic010G165100 Sobic002G311000 Sobic002G311000 Sobic002G142500--Sobic002G311000 Sobic002G142500--Sobic009G235700 Sobic002G142500--Sobic002G045200 Sobic002G246000 Sobic002G246000 Sobic002G142500--Sobic002G246000 Sobic006G241800 Sobic006G241800 Sobic002G142500--Sobic006G241800 Sobic002G360500 Sobic002G360500 Sobic001G518000--Sobic002G360500 Sobic002G417000 Sobic002G417000 Sobic001G518000--Sobic002G417000 Sobic003G307200 Sobic003G307200 Sobic001G518000--Sobic003G307200 Sobic010G014500 Sobic010G014500 Sobic001G518000--Sobic010G014500 Sobic007G165800 Sobic007G165800 Sobic001G518000--Sobic007G165800 Sobic001G518000--Sobic010G211800 Sobic001G493900 Sobic001G493900 Sobic001G518000--Sobic001G493900 Sobic008G038200 Sobic008G038200 Sobic001G518000--Sobic008G038200 Sobic004G003700 Sobic004G003700 Sobic001G518000--Sobic004G003700 Sobic009G128800--Sobic001G518000 Sobic009G128800--Sobic001G522300 Sobic009G128800--Sobic009G216300 Sobic001G093000 Sobic001G093000 Sobic009G128800--Sobic001G093000 Sobic009G128800--Sobic009G235700 Sobic009G128800--Sobic010G211800 Sobic001G286400 Sobic001G286400 Sobic009G128800--Sobic001G286400 Sobic009G128800--Sobic002G360500 Sobic003G360700 Sobic003G360700 Sobic009G128800--Sobic003G360700 Sobic006G125800 Sobic006G125800 Sobic009G235700--Sobic006G125800 Sobic010G020600 Sobic010G020600 Sobic009G235700--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic009G235700--Sobic001G221900 Sobic004G248100 Sobic004G248100 Sobic009G235700--Sobic004G248100 Sobic003G339600 Sobic003G339600 Sobic009G235700--Sobic003G339600 Sobic009G235700--Sobic001G522300 Sobic009G235700--Sobic007G165800 Sobic004G283800 Sobic004G283800 Sobic009G235700--Sobic004G283800 Sobic009G235700--Sobic003G360700 Sobic010G165100--Sobic002G246000 Sobic010G165100--Sobic001G389600 Sobic010G165100--Sobic002G142500 Sobic010G165100--Sobic002G045200 Sobic010G165100--Sobic006G274866 Sobic002G403000 Sobic002G403000 Sobic010G165100--Sobic002G403000 Sobic006G032800 Sobic006G032800 Sobic010G165100--Sobic006G032800 Sobic010G165100--Sobic002G311000 Sobic004G243800 Sobic004G243800 Sobic010G165100--Sobic004G243800 Sobic003G365800 Sobic003G365800 Sobic009G151100--Sobic003G365800 Sobic010G156100 Sobic010G156100 Sobic009G151100--Sobic010G156100 Sobic003G283400 Sobic003G283400 Sobic009G151100--Sobic003G283400 Sobic003G308100 Sobic003G308100 Sobic009G151100--Sobic003G308100 Sobic009G151100--Sobic009G216300 Sobic002G428000 Sobic002G428000 Sobic009G151100--Sobic002G428000 Sobic004G000700 Sobic004G000700 Sobic009G151100--Sobic004G000700 Sobic003G078300 Sobic003G078300 Sobic009G151100--Sobic003G078300 Sobic008G075200 Sobic008G075200 Sobic009G151100--Sobic008G075200 Sobic010G211700 Sobic010G211700 Sobic010G211800--Sobic010G211700 Sobic010G211800--Sobic002G360500 Sobic010G211800--Sobic002G417000 Sobic003G031700 Sobic003G031700 Sobic010G211800--Sobic003G031700 Sobic010G211800--Sobic002G045200 Sobic001G074100 Sobic001G074100 Sobic010G211800--Sobic001G074100 Sobic002G362700 Sobic002G362700 Sobic010G211800--Sobic002G362700 Sobic010G211800--Sobic006G241800 Sobic008G096200 Sobic008G096200 Sobic010G211800--Sobic008G096200 Sobic001G074000 Sobic001G074000 Sobic001G522300--Sobic001G074000 Sobic007G116800 Sobic007G116800 Sobic001G522300--Sobic007G116800 Sobic001G522300--Sobic001G493900 Sobic001G522300--Sobic003G031700 Sobic001G522300--Sobic002G362700 Sobic001G522300--Sobic001G286400 Sobic001G522300--Sobic009G235700 Sobic009G129700 Sobic009G129700 Sobic001G522300--Sobic009G129700 Sobic001G522300--Sobic004G283800 Sobic002G045200--Sobic001G389600 Sobic002G045200--Sobic010G211800 Sobic002G045200--Sobic001G074100 Sobic002G045200--Sobic010G165100 Sobic002G045200--Sobic006G241800 Sobic002G045200--Sobic001G522300 Sobic002G045200--Sobic002G362700 Sobic002G045200--Sobic002G311000 Sobic002G045200--Sobic002G142500
Octagon: transcription factors


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