Gene annotation
| Transcriptome id | Sobic.010G092900.1 |
|---|---|
| Synonym | FTSH6, Sb10g008130, ATFTSH6 |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) Up-reguralion under heat (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) OsFtsH6 FtsH protease, homologue of AtFtsH6, expressed |
| UniProt | C5Z7C9 |
| Pfam | PF00004 PF01434 |
| Panther DB | PTHR23076 PTHR23076:SF54 |
| NCBI CDD | - |
| KEGG Orthology | K03798; ftsH, cell division protease FtsH |
| Gene Ontology | GO:0005524; ATP binding GO:0006508proteolysis GO:0004222metalloendopeptidase activity |
Orthologs (automatic annotation)
| TAIR | AT5G15250 : FTSH protease 6 |
|---|---|
| RAP-DB (Rice) | LOC_Os06g12370.1 : OsFtsH6 FtsH protease, homologue of AtFtsH6, expressed |
| MaizeGDB (Corn) | Zm00025a042601 |
| Brachypodium | KQK18862 |
| Barley | HORVU7Hr1G107740.1 , HORVU7Hr1G107740.2 , HORVU7Hr1G107740.3 |
| Wheat | TraesCS7A02G188300 , TraesCS7B02G373000 , TraesCS7B02G093400 , TraesCS7A02G471000 , TraesCS7D02G458400 , TraesCS7A02G471000 , TraesCS7D02G189400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G463450 | - | - |
| 2 | Sobic.001G463450 | - | - |
| 3 | Sobic.001G463450 | - | - |
| 4 | Sobic.001G463450 | - | - |
| 5 | Sobic.001G463450 | - | - |
| 6 | Sobic.001G463450 | - | - |
| 7 | Sobic.008G114800 | - | - |
| 8 | Sobic.005G016400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed | - |
| 9 | Sobic.001G332966 | - | - |
| 10 | Sobic.005G095640 | - | - |
| 11 | Sobic.003G006866 | - | - |
| 12 | Sobic.004G283550 | - | - |
| 13 | Sobic.009G076550 | - | - |
| 14 | Sobic.001G338000 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 15 | Sobic.002G102700 | cytochrome P450, putative, expressed | - |
| 16 | Sobic.004G295000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@zinc finger protein, putative, expressed | - |
| 17 | Sobic.004G057900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 18 | Sobic.003G173700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed | K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase |
| 19 | Sobic.001G353400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WD-40 repeat family protein, putative, expressed | - |
| 20 | Sobic.004G335500 | "P-(S)-hydroxymandelonitrile lyase, up-regulated under drought stress "(PubMedID : 24655390)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed | - |
Gene co-expression network
Octagon: transcription factors
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