Gene annotation
| Transcriptome id | Sobic.005G016400.1 |
|---|---|
| Synonym | Sb05g001380 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) DUF567 domain containing protein, putative, expressed |
| UniProt | C5Y3J9 |
| Pfam | PF04525 |
| Panther DB | PTHR31087 PTHR31087:SF5 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G38640 : Protein of unknown function (DUF567) |
|---|---|
| RAP-DB (Rice) | LOC_Os12g02720.1 : DUF567 domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a033325 , Zm00025a028729 |
| Brachypodium | KQK10317 , KQJ92516 |
| Barley | HORVU4Hr1G047270.1 , HORVU3Hr1G080430.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G084400 | OsAPx7 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 2 | Sobic.010G092900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsFtsH6 FtsH protease, homologue of AtFtsH6, expressed | K03798: ftsH, cell division protease FtsH |
| 3 | Sobic.010G259100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized UPF0114 domain containing protein, expressed | - |
| 4 | Sobic.001G500100 | dehydrogenase, putative, expressed | - |
| 5 | Sobic.001G332966 | - | - |
| 6 | Sobic.003G256100 | -(PubMedID : 29147737)@Two Pore Ca channel(PubMedID : 22196357)@two pore calcium channel protein 1, putative, expressed | K16900: TPC1, two pore calcium channel protein, plant |
| 7 | Sobic.003G006866 | - | - |
| 8 | Sobic.009G185201 | - | - |
| 9 | Sobic.007G108800 | - | - |
| 10 | Sobic.003G173700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed | K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase |
| 11 | Sobic.001G033100 | expressed protein | - |
| 12 | Sobic.003G042700 | TMS membrane protein/tumour differentially expressed protein, putative, expressed | - |
| 13 | Sobic.001G338000 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 14 | Sobic.007G108400 | expressed protein | - |
| 15 | Sobic.003G022300 | SOUL heme-binding protein, putative, expressed | - |
| 16 | Sobic.004G335500 | "P-(S)-hydroxymandelonitrile lyase, up-regulated under drought stress "(PubMedID : 24655390)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed | - |
| 17 | Sobic.002G278800 | ribonuclease T2 family domain containing protein, expressed | K01166: ribonuclease T2 |
| 18 | Sobic.008G015800 | major facilitator superfamily antiporter, putative, expressed | - |
| 19 | Sobic.007G004700 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 20 | Sobic.002G036900 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS3-19 - C2H2 zinc finger protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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