Gene annotation
Transcriptome id Sobic.003G042700.1,Sobic.003G042700.3,Sobic.003G042700.4,Sobic.003G042700.5,Sobic.003G042700.2
Synonym Sb03g003750
Functional annotation TMS membrane protein/tumour differentially expressed protein, putative, expressed
UniProt A0A1B6Q1D1 , C5XMP7
Pfam PF03348
Panther DB PTHR10383 PTHR10383 PTHR10383:SF23
NCBI CDD KOG2592; Tumor differentially expressed (TDE) protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G24460 : Serinc-domain containing serine and sphingolipid biosynthesis protein
RAP-DB (Rice) LOC_Os01g08460.1 : TMS membrane protein/tumour differentially expressed protein, putative, expressed
MaizeGDB (Corn) Zm00025a035767 , Zm00025a023167
Brachypodium KQK03019 , KQK03018 , KQK03017 , KQK03020 , KQK03021
Barley HORVU3Hr1G021750.30 , HORVU3Hr1G021750.31 , HORVU3Hr1G021750.18 , HORVU3Hr1G021750.19 , HORVU3Hr1G021750.16 , HORVU3Hr1G021750.17 , HORVU3Hr1G021750.14 , HORVU3Hr1G021750.15 , HORVU3Hr1G021750.12 , HORVU3Hr1G021750.13 , HORVU3Hr1G021750.10 , HORVU3Hr1G021750.11 , HORVU3Hr1G021750.27 , HORVU3Hr1G021750.26 , HORVU3Hr1G021750.25 , HORVU3Hr1G021750.24 , HORVU3Hr1G021750.23 , HORVU3Hr1G021750.22 , HORVU3Hr1G021750.21 , HORVU3Hr1G021750.20 , HORVU3Hr1G021750.29 , HORVU3Hr1G021750.28 , HORVU3Hr1G021750.9 , HORVU3Hr1G021750.4 , HORVU3Hr1G021750.5 , HORVU3Hr1G021750.6 , HORVU3Hr1G021750.7 , HORVU3Hr1G021750.1 , HORVU3Hr1G021750.2 , HORVU3Hr1G021750.3
Wheat TraesCS3D02G120000 , TraesCS3B02G137300 , TraesCS3A02G118200
Populus -


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cDNA sequences
Sobic.003G042700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G185201 - -
2 Sobic.002G299900 expressed protein -
3 Sobic.004G020300 expressed protein -
4 Sobic.001G222600 cyanate hydratase, putative, expressed K01725: cyanate lyase
5 Sobic.008G095400 - -
6 Sobic.003G022300 SOUL heme-binding protein, putative, expressed -
7 Sobic.006G084400 OsAPx7 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
8 Sobic.001G033100 expressed protein -
9 Sobic.007G004700 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
10 Sobic.002G225400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cytochrome P450, putative, expressed K09843: (+)-abscisic acid 8'-hydroxylase
11 Sobic.009G155600 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
12 Sobic.004G343900 expressed protein -
13 Sobic.004G309400 DCL, chloroplast precursor, putative, expressed -
14 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
15 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
16 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
17 Sobic.009G210200 Acid phosphatase/vanadium-dependent haloperoxidase-related protein(PubMedID : 26465154)@Divergent PAP2 family domain containing protein, expressed -
18 Sobic.002G272100 expressed protein -
19 Sobic.010G259100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized UPF0114 domain containing protein, expressed -
20 Sobic.004G338100 glycogen synthase 1, putative, expressed -


Gene co-expression network
sample Sobic003G042700 Sobic003G042700 Sobic009G185201 Sobic009G185201 Sobic003G042700--Sobic009G185201 Sobic002G299900 Sobic002G299900 Sobic003G042700--Sobic002G299900 Sobic004G020300 Sobic004G020300 Sobic003G042700--Sobic004G020300 Sobic001G222600 Sobic001G222600 Sobic003G042700--Sobic001G222600 Sobic008G095400 Sobic008G095400 Sobic003G042700--Sobic008G095400 Sobic003G022300 Sobic003G022300 Sobic003G042700--Sobic003G022300 Sobic006G084400 Sobic006G084400 Sobic003G042700--Sobic006G084400 Sobic001G033100 Sobic001G033100 Sobic003G042700--Sobic001G033100 Sobic007G004700 Sobic007G004700 Sobic003G042700--Sobic007G004700 Sobic002G225400 Sobic002G225400 Sobic009G185201--Sobic002G225400 Sobic009G185201--Sobic003G022300 Sobic009G185201--Sobic006G084400 Sobic009G206300 Sobic009G206300 Sobic009G185201--Sobic009G206300 Sobic009G185201--Sobic001G033100 Sobic007G108800 Sobic007G108800 Sobic009G185201--Sobic007G108800 Sobic003G131800 Sobic003G131800 Sobic009G185201--Sobic003G131800 Sobic009G210200 Sobic009G210200 Sobic009G185201--Sobic009G210200 Sobic009G185201--Sobic003G042700 Sobic007G205500 Sobic007G205500 Sobic002G299900--Sobic007G205500 Sobic001G314200 Sobic001G314200 Sobic002G299900--Sobic001G314200 Sobic006G067400 Sobic006G067400 Sobic002G299900--Sobic006G067400 Sobic005G116100 Sobic005G116100 Sobic002G299900--Sobic005G116100 Sobic008G171300 Sobic008G171300 Sobic002G299900--Sobic008G171300 Sobic004G343900 Sobic004G343900 Sobic002G299900--Sobic004G343900 Sobic005G194100 Sobic005G194100 Sobic002G299900--Sobic005G194100 Sobic006G054300 Sobic006G054300 Sobic002G299900--Sobic006G054300 Sobic002G299900--Sobic004G020300 Sobic009G131800 Sobic009G131800 Sobic004G020300--Sobic009G131800 Sobic004G020300--Sobic009G210200 Sobic002G272100 Sobic002G272100 Sobic004G020300--Sobic002G272100 Sobic001G405700 Sobic001G405700 Sobic004G020300--Sobic001G405700 Sobic002G267900 Sobic002G267900 Sobic004G020300--Sobic002G267900 Sobic008G172700 Sobic008G172700 Sobic004G020300--Sobic008G172700 Sobic004G343000 Sobic004G343000 Sobic004G020300--Sobic004G343000 Sobic006G021600 Sobic006G021600 Sobic004G020300--Sobic006G021600 Sobic004G020300--Sobic003G022300 Sobic001G222600--Sobic001G033100 Sobic001G222600--Sobic006G084400 Sobic005G038400 Sobic005G038400 Sobic001G222600--Sobic005G038400 Sobic005G133700 Sobic005G133700 Sobic001G222600--Sobic005G133700 Sobic007G079400 Sobic007G079400 Sobic001G222600--Sobic007G079400 Sobic001G173500 Sobic001G173500 Sobic001G222600--Sobic001G173500 Sobic009G155600 Sobic009G155600 Sobic001G222600--Sobic009G155600 Sobic002G200900 Sobic002G200900 Sobic001G222600--Sobic002G200900 Sobic001G222600--Sobic004G020300 Sobic001G025800 Sobic001G025800 Sobic008G095400--Sobic001G025800 Sobic001G513800 Sobic001G513800 Sobic008G095400--Sobic001G513800 Sobic003G162900 Sobic003G162900 Sobic008G095400--Sobic003G162900 Sobic008G095400--Sobic009G155600 Sobic007G090537 Sobic007G090537 Sobic008G095400--Sobic007G090537 Sobic002G221600 Sobic002G221600 Sobic008G095400--Sobic002G221600 Sobic008G095400--Sobic006G054300 Sobic010G204900 Sobic010G204900 Sobic008G095400--Sobic010G204900 Sobic010G095200 Sobic010G095200 Sobic008G095400--Sobic010G095200 Sobic002G227700 Sobic002G227700 Sobic003G022300--Sobic002G227700 Sobic003G022300--Sobic004G020300 Sobic001G221300 Sobic001G221300 Sobic003G022300--Sobic001G221300 Sobic001G295300 Sobic001G295300 Sobic003G022300--Sobic001G295300 Sobic003G022300--Sobic009G210200 Sobic003G022300--Sobic001G033100 Sobic003G022300--Sobic006G067400 Sobic003G022300--Sobic004G343900 Sobic003G022300--Sobic007G004700 Sobic006G084400--Sobic002G225400 Sobic001G500100 Sobic001G500100 Sobic006G084400--Sobic001G500100 Sobic006G084400--Sobic001G033100 Sobic006G084400--Sobic001G222600 Sobic006G084400--Sobic009G185201 Sobic006G084400--Sobic007G108800 Sobic006G084400--Sobic009G210200 Sobic006G084400--Sobic005G038400 Sobic003G375700 Sobic003G375700 Sobic006G084400--Sobic003G375700 Sobic001G033100--Sobic003G022300 Sobic001G033100--Sobic009G210200 Sobic008G015800 Sobic008G015800 Sobic001G033100--Sobic008G015800 Sobic001G033100--Sobic004G020300 Sobic001G033100--Sobic001G222600 Sobic001G033100--Sobic006G084400 Sobic001G033100--Sobic006G067400 Sobic001G033100--Sobic002G200900 Sobic008G064500 Sobic008G064500 Sobic001G033100--Sobic008G064500 Sobic004G309400 Sobic004G309400 Sobic007G004700--Sobic004G309400 Sobic001G035800 Sobic001G035800 Sobic007G004700--Sobic001G035800 Sobic001G175700 Sobic001G175700 Sobic007G004700--Sobic001G175700 Sobic007G004700--Sobic007G205500 Sobic001G083100 Sobic001G083100 Sobic007G004700--Sobic001G083100 Sobic007G004700--Sobic001G405700 Sobic003G254600 Sobic003G254600 Sobic007G004700--Sobic003G254600 Sobic007G004700--Sobic003G022300 Sobic009G174700 Sobic009G174700 Sobic007G004700--Sobic009G174700
Octagon: transcription factors


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