Gene annotation
Transcriptome id Sobic.003G256100.2,Sobic.003G256100.1
Synonym ATTPC1, ATCCH1, TPC1, Similar to Two pore calcium channel protein 1;Similar to Two pore calcium channel protein 1, FOU2, Sb03g031110
Functional annotation - (PubMedID : 29147737)
Two Pore Ca channel (PubMedID : 22196357)
two pore calcium channel protein 1, putative, expressed
UniProt C5XGP5
Pfam PF13499 PF00520
Panther DB PTHR10037
NCBI CDD -
KEGG Orthology K16900; TPC1, two pore calcium channel protein, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT4G03560 : two-pore channel 1
RAP-DB (Rice) LOC_Os01g48680.2,LOC_Os01g48680.1 : two pore calcium channel protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a038826
Brachypodium PNT72578 , KQK09180
Barley -
Wheat TraesCS3D02G268800 , TraesCS3D02G268800 , TraesCS3A02G268700 , TraesCS3A02G268700 , TraesCS3A02G268700 , TraesCS3B02G303100
Populus PNT08164 , PNT08165 , PNT08161 , PNT08163 , PNT08162


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cDNA sequences
Sobic.003G256100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
2 Sobic.001G147300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glyoxalase family protein, putative, expressed -
3 Sobic.003G131800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed -
4 Sobic.006G029800 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
5 Sobic.001G469700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
6 Sobic.009G033200 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.006G175700 down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed -
8 Sobic.002G366500 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
9 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
10 Sobic.002G278800 ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
11 Sobic.005G016400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
12 Sobic.009G210100 EMB1796, putative, expressed -
13 Sobic.007G130800 aldehyde dehydrogenase, putative, expressed K00130: betB, betaine-aldehyde dehydrogenase
14 Sobic.002G278700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
15 Sobic.001G173500 - -
16 Sobic.009G093900 rhodanese-like domain containing protein, putative, expressed -
17 Sobic.003G173700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
18 Sobic.004G335500 "P-(S)-hydroxymandelonitrile lyase, up-regulated under drought stress "(PubMedID : 24655390)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed -
19 Sobic.008G189500 similar to Secretory acid phosphatase - Pfam Calcineurin-like phosphoesterase(PubMedID : 24655390)@similar to Secretory acid phosphatase - Pfam Calcineurin -like phosphoesterase(PubMedID : 24655390)@Ser/Thr protein phosphatase family protein, putative, expressed -
20 Sobic.007G195300 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13


Gene co-expression network
sample Sobic003G256100 Sobic003G256100 Sobic002G121300 Sobic002G121300 Sobic003G256100--Sobic002G121300 Sobic001G147300 Sobic001G147300 Sobic003G256100--Sobic001G147300 Sobic003G131800 Sobic003G131800 Sobic003G256100--Sobic003G131800 Sobic006G029800 Sobic006G029800 Sobic003G256100--Sobic006G029800 Sobic001G469700 Sobic001G469700 Sobic003G256100--Sobic001G469700 Sobic009G033200 Sobic009G033200 Sobic003G256100--Sobic009G033200 Sobic006G175700 Sobic006G175700 Sobic003G256100--Sobic006G175700 Sobic002G366500 Sobic002G366500 Sobic003G256100--Sobic002G366500 Sobic003G007800 Sobic003G007800 Sobic003G256100--Sobic003G007800 Sobic003G260900 Sobic003G260900 Sobic002G121300--Sobic003G260900 Sobic001G295300 Sobic001G295300 Sobic002G121300--Sobic001G295300 Sobic003G085000 Sobic003G085000 Sobic002G121300--Sobic003G085000 Sobic004G228200 Sobic004G228200 Sobic002G121300--Sobic004G228200 Sobic007G208300 Sobic007G208300 Sobic002G121300--Sobic007G208300 Sobic006G145500 Sobic006G145500 Sobic002G121300--Sobic006G145500 Sobic008G090900 Sobic008G090900 Sobic002G121300--Sobic008G090900 Sobic008G067100 Sobic008G067100 Sobic002G121300--Sobic008G067100 Sobic009G093900 Sobic009G093900 Sobic002G121300--Sobic009G093900 Sobic003G327700 Sobic003G327700 Sobic001G147300--Sobic003G327700 Sobic007G130800 Sobic007G130800 Sobic001G147300--Sobic007G130800 Sobic001G173500 Sobic001G173500 Sobic001G147300--Sobic001G173500 Sobic005G224500 Sobic005G224500 Sobic001G147300--Sobic005G224500 Sobic002G301200 Sobic002G301200 Sobic001G147300--Sobic002G301200 Sobic001G147300--Sobic002G366500 Sobic001G147300--Sobic009G033200 Sobic006G161900 Sobic006G161900 Sobic001G147300--Sobic006G161900 Sobic007G069200 Sobic007G069200 Sobic001G147300--Sobic007G069200 Sobic002G278700 Sobic002G278700 Sobic003G131800--Sobic002G278700 Sobic002G278800 Sobic002G278800 Sobic003G131800--Sobic002G278800 Sobic008G030700 Sobic008G030700 Sobic003G131800--Sobic008G030700 Sobic003G131800--Sobic006G175700 Sobic007G195300 Sobic007G195300 Sobic003G131800--Sobic007G195300 Sobic010G012400 Sobic010G012400 Sobic003G131800--Sobic010G012400 Sobic003G173700 Sobic003G173700 Sobic003G131800--Sobic003G173700 Sobic001G249500 Sobic001G249500 Sobic003G131800--Sobic001G249500 Sobic009G136500 Sobic009G136500 Sobic003G131800--Sobic009G136500 Sobic007G025400 Sobic007G025400 Sobic006G029800--Sobic007G025400 Sobic001G376700 Sobic001G376700 Sobic006G029800--Sobic001G376700 Sobic006G029800--Sobic009G093900 Sobic006G261700 Sobic006G261700 Sobic006G029800--Sobic006G261700 Sobic006G029800--Sobic001G295300 Sobic010G208400 Sobic010G208400 Sobic006G029800--Sobic010G208400 Sobic009G124000 Sobic009G124000 Sobic006G029800--Sobic009G124000 Sobic001G291900 Sobic001G291900 Sobic006G029800--Sobic001G291900 Sobic006G029800--Sobic007G069200 Sobic009G190600 Sobic009G190600 Sobic001G469700--Sobic009G190600 Sobic006G176500 Sobic006G176500 Sobic001G469700--Sobic006G176500 Sobic006G084400 Sobic006G084400 Sobic001G469700--Sobic006G084400 Sobic005G038400 Sobic005G038400 Sobic001G469700--Sobic005G038400 Sobic007G079400 Sobic007G079400 Sobic001G469700--Sobic007G079400 Sobic002G393700 Sobic002G393700 Sobic001G469700--Sobic002G393700 Sobic001G469700--Sobic001G173500 Sobic003G125701 Sobic003G125701 Sobic001G469700--Sobic003G125701 Sobic001G222600 Sobic001G222600 Sobic001G469700--Sobic001G222600 Sobic005G190800 Sobic005G190800 Sobic009G033200--Sobic005G190800 Sobic010G161600 Sobic010G161600 Sobic009G033200--Sobic010G161600 Sobic008G032000 Sobic008G032000 Sobic009G033200--Sobic008G032000 Sobic004G038300 Sobic004G038300 Sobic009G033200--Sobic004G038300 Sobic004G335500 Sobic004G335500 Sobic009G033200--Sobic004G335500 Sobic005G141000 Sobic005G141000 Sobic009G033200--Sobic005G141000 Sobic002G209800 Sobic002G209800 Sobic009G033200--Sobic002G209800 Sobic008G189500 Sobic008G189500 Sobic009G033200--Sobic008G189500 Sobic009G033200--Sobic003G007800 Sobic006G175700--Sobic005G190800 Sobic006G175700--Sobic008G030700 Sobic006G175700--Sobic002G278800 Sobic006G175700--Sobic003G007800 Sobic006G175700--Sobic001G249500 Sobic001G338000 Sobic001G338000 Sobic006G175700--Sobic001G338000 Sobic002G128600 Sobic002G128600 Sobic006G175700--Sobic002G128600 Sobic006G175700--Sobic003G131800 Sobic006G175700--Sobic002G278700 Sobic006G074300 Sobic006G074300 Sobic002G366500--Sobic006G074300 Sobic009G222000 Sobic009G222000 Sobic002G366500--Sobic009G222000 Sobic005G116500 Sobic005G116500 Sobic002G366500--Sobic005G116500 Sobic002G366500--Sobic007G195300 Sobic002G366500--Sobic005G224500 Sobic002G366500--Sobic002G278800 Sobic002G366500--Sobic002G278700 Sobic002G366500--Sobic003G131800 Sobic008G136500 Sobic008G136500 Sobic002G366500--Sobic008G136500 Sobic003G007800--Sobic008G189500 Sobic001G255300 Sobic001G255300 Sobic003G007800--Sobic001G255300 Sobic003G007800--Sobic005G190800 Sobic003G007800--Sobic006G175700 Sobic004G328900 Sobic004G328900 Sobic003G007800--Sobic004G328900 Sobic003G317800 Sobic003G317800 Sobic003G007800--Sobic003G317800 Sobic003G007800--Sobic002G128600 Sobic005G029400 Sobic005G029400 Sobic003G007800--Sobic005G029400 Sobic003G007800--Sobic004G038300
Octagon: transcription factors


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