Gene annotation
Transcriptome id Sobic.001G469700.1,Sobic.001G469700.2,Sobic.001G469700.3
Synonym LEW1, Sb01g044020
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QPX8 , A0A1B6QPV7 , A0A1Z5SBC2
Pfam -
Panther DB PTHR21528 PTHR21528:SF0 PTHR21528:SF0 PTHR21528
NCBI CDD -
KEGG Orthology K11778; DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11755 : Undecaprenyl pyrophosphate synthetase family protein
RAP-DB (Rice) LOC_Os03g10080.1 : expressed protein
MaizeGDB (Corn) Zm00025a001214
Brachypodium KQK23122
Barley HORVU4Hr1G071070.31 , HORVU4Hr1G071070.30 , HORVU4Hr1G071070.32 , HORVU4Hr1G071070.35 , HORVU4Hr1G071070.34 , HORVU4Hr1G071070.7 , HORVU4Hr1G071070.6 , HORVU4Hr1G071070.5 , HORVU4Hr1G071070.4 , HORVU4Hr1G071070.3 , HORVU4Hr1G071070.2 , HORVU4Hr1G071070.1 , HORVU4Hr1G071070.9 , HORVU4Hr1G071070.8 , HORVU6Hr1G033160.20 , HORVU6Hr1G033160.21 , HORVU6Hr1G033160.30 , HORVU6Hr1G033160.24 , HORVU6Hr1G033160.25 , HORVU4Hr1G071070.19 , HORVU6Hr1G033160.27 , HORVU6Hr1G033160.28 , HORVU6Hr1G033160.29 , HORVU4Hr1G071070.15 , HORVU4Hr1G071070.14 , HORVU4Hr1G071070.13 , HORVU4Hr1G071070.12 , HORVU4Hr1G071070.11 , HORVU4Hr1G071070.10 , HORVU4Hr1G071070.26 , HORVU4Hr1G071070.27 , HORVU4Hr1G071070.24 , HORVU4Hr1G071070.25 , HORVU4Hr1G071070.22 , HORVU4Hr1G071070.23 , HORVU4Hr1G071070.20 , HORVU4Hr1G071070.21 , HORVU4Hr1G071070.18 , HORVU4Hr1G071070.28 , HORVU4Hr1G071070.29 , HORVU4Hr1G071070.17 , HORVU4Hr1G071070.16 , HORVU6Hr1G033160.14
Wheat TraesCS6B02G191400 , TraesCS4A02G042300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G190600 oryzain alpha chain precursor, putative, expressed -
2 Sobic.006G176500 expressed protein -
3 Sobic.006G084400 OsAPx7 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
4 Sobic.005G038400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@RCN1 Centroradialis-like1 homogous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
5 Sobic.007G079400 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
6 Sobic.002G393700 expressed protein -
7 Sobic.001G173500 - -
8 Sobic.003G125701 - -
9 Sobic.001G222600 cyanate hydratase, putative, expressed K01725: cyanate lyase
10 Sobic.001G435400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
11 Sobic.004G170200 decarboxylase, putative, expressed K01590: hdc, histidine decarboxylase
12 Sobic.003G256100 -(PubMedID : 29147737)@Two Pore Ca channel(PubMedID : 22196357)@two pore calcium channel protein 1, putative, expressed K16900: TPC1, two pore calcium channel protein, plant
13 Sobic.001G155900 expressed protein -
14 Sobic.009G155300 solute carrier family 35 member F2, putative, expressed K15287: solute carrier family 35, member F1/2
15 Sobic.002G321400 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
16 Sobic.008G021200 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
17 Sobic.007G130800 aldehyde dehydrogenase, putative, expressed K00130: betB, betaine-aldehyde dehydrogenase
18 Sobic.004G060100 ATP synthase, putative, expressed K02145: ATPeV1A, V-type H+-transporting ATPase subunit A
19 Sobic.004G018000 bifunctional protein folD, putative, expressed -
20 Sobic.006G000300 - -


Gene co-expression network
sample Sobic001G469700 Sobic001G469700 Sobic009G190600 Sobic009G190600 Sobic001G469700--Sobic009G190600 Sobic006G176500 Sobic006G176500 Sobic001G469700--Sobic006G176500 Sobic006G084400 Sobic006G084400 Sobic001G469700--Sobic006G084400 Sobic005G038400 Sobic005G038400 Sobic001G469700--Sobic005G038400 Sobic007G079400 Sobic007G079400 Sobic001G469700--Sobic007G079400 Sobic002G393700 Sobic002G393700 Sobic001G469700--Sobic002G393700 Sobic001G173500 Sobic001G173500 Sobic001G469700--Sobic001G173500 Sobic003G125701 Sobic003G125701 Sobic001G469700--Sobic003G125701 Sobic001G222600 Sobic001G222600 Sobic001G469700--Sobic001G222600 Sobic001G292000 Sobic001G292000 Sobic009G190600--Sobic001G292000 Sobic007G108400 Sobic007G108400 Sobic009G190600--Sobic007G108400 Sobic002G072400 Sobic002G072400 Sobic009G190600--Sobic002G072400 Sobic009G190600--Sobic007G079400 Sobic008G114300 Sobic008G114300 Sobic009G190600--Sobic008G114300 Sobic002G128900 Sobic002G128900 Sobic009G190600--Sobic002G128900 Sobic002G200900 Sobic002G200900 Sobic009G190600--Sobic002G200900 Sobic004G238200 Sobic004G238200 Sobic009G190600--Sobic004G238200 Sobic002G349100 Sobic002G349100 Sobic009G190600--Sobic002G349100 Sobic006G176500--Sobic001G469700 Sobic007G089500 Sobic007G089500 Sobic006G176500--Sobic007G089500 Sobic009G093900 Sobic009G093900 Sobic006G176500--Sobic009G093900 Sobic002G321400 Sobic002G321400 Sobic006G176500--Sobic002G321400 Sobic006G176500--Sobic003G125701 Sobic009G168600 Sobic009G168600 Sobic006G176500--Sobic009G168600 Sobic001G462200 Sobic001G462200 Sobic006G176500--Sobic001G462200 Sobic006G176500--Sobic006G084400 Sobic006G176500--Sobic002G393700 Sobic002G225400 Sobic002G225400 Sobic006G084400--Sobic002G225400 Sobic001G500100 Sobic001G500100 Sobic006G084400--Sobic001G500100 Sobic001G033100 Sobic001G033100 Sobic006G084400--Sobic001G033100 Sobic006G084400--Sobic001G222600 Sobic009G185201 Sobic009G185201 Sobic006G084400--Sobic009G185201 Sobic007G108800 Sobic007G108800 Sobic006G084400--Sobic007G108800 Sobic009G210200 Sobic009G210200 Sobic006G084400--Sobic009G210200 Sobic006G084400--Sobic005G038400 Sobic003G375700 Sobic003G375700 Sobic006G084400--Sobic003G375700 Sobic005G038400--Sobic007G108800 Sobic005G038400--Sobic002G225400 Sobic005G038400--Sobic006G084400 Sobic005G038400--Sobic001G222600 Sobic003G131800 Sobic003G131800 Sobic005G038400--Sobic003G131800 Sobic005G038400--Sobic009G185201 Sobic009G206300 Sobic009G206300 Sobic005G038400--Sobic009G206300 Sobic005G038400--Sobic001G469700 Sobic002G278800 Sobic002G278800 Sobic005G038400--Sobic002G278800 Sobic007G079400--Sobic007G108400 Sobic003G105900 Sobic003G105900 Sobic007G079400--Sobic003G105900 Sobic001G057700 Sobic001G057700 Sobic007G079400--Sobic001G057700 Sobic003G264800 Sobic003G264800 Sobic007G079400--Sobic003G264800 Sobic002G401000 Sobic002G401000 Sobic007G079400--Sobic002G401000 Sobic003G373600 Sobic003G373600 Sobic007G079400--Sobic003G373600 Sobic007G079400--Sobic002G393700 Sobic005G062700 Sobic005G062700 Sobic007G079400--Sobic005G062700 Sobic004G344000 Sobic004G344000 Sobic007G079400--Sobic004G344000 Sobic002G170200 Sobic002G170200 Sobic002G393700--Sobic002G170200 Sobic001G435400 Sobic001G435400 Sobic002G393700--Sobic001G435400 Sobic006G261700 Sobic006G261700 Sobic002G393700--Sobic006G261700 Sobic002G393700--Sobic007G079400 Sobic006G127600 Sobic006G127600 Sobic002G393700--Sobic006G127600 Sobic003G176000 Sobic003G176000 Sobic002G393700--Sobic003G176000 Sobic001G009600 Sobic001G009600 Sobic002G393700--Sobic001G009600 Sobic004G018000 Sobic004G018000 Sobic002G393700--Sobic004G018000 Sobic001G412100 Sobic001G412100 Sobic002G393700--Sobic001G412100 Sobic003G327700 Sobic003G327700 Sobic001G173500--Sobic003G327700 Sobic003G244200 Sobic003G244200 Sobic001G173500--Sobic003G244200 Sobic001G173500--Sobic003G125701 Sobic001G173500--Sobic001G222600 Sobic007G069200 Sobic007G069200 Sobic001G173500--Sobic007G069200 Sobic001G147300 Sobic001G147300 Sobic001G173500--Sobic001G147300 Sobic001G173500--Sobic006G084400 Sobic001G012600 Sobic001G012600 Sobic001G173500--Sobic001G012600 Sobic001G012200 Sobic001G012200 Sobic001G173500--Sobic001G012200 Sobic003G125701--Sobic001G173500 Sobic003G125701--Sobic001G033100 Sobic003G125701--Sobic001G292000 Sobic003G125701--Sobic009G210200 Sobic002G279700 Sobic002G279700 Sobic003G125701--Sobic002G279700 Sobic001G496300 Sobic001G496300 Sobic003G125701--Sobic001G496300 Sobic001G357300 Sobic001G357300 Sobic003G125701--Sobic001G357300 Sobic003G125701--Sobic007G079400 Sobic008G015800 Sobic008G015800 Sobic003G125701--Sobic008G015800 Sobic001G222600--Sobic001G033100 Sobic001G222600--Sobic006G084400 Sobic001G222600--Sobic005G038400 Sobic005G133700 Sobic005G133700 Sobic001G222600--Sobic005G133700 Sobic001G222600--Sobic007G079400 Sobic001G222600--Sobic001G173500 Sobic009G155600 Sobic009G155600 Sobic001G222600--Sobic009G155600 Sobic001G222600--Sobic002G200900 Sobic004G020300 Sobic004G020300 Sobic001G222600--Sobic004G020300
Octagon: transcription factors


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