Gene annotation
Transcriptome id Sobic.004G170200.1
Synonym Sb04g022140, emb1075
Functional annotation decarboxylase, putative, expressed
UniProt C5XU32
Pfam PF00282
Panther DB PTHR11999 PTHR11999:SF83
NCBI CDD KOG0629; Glutamate decarboxylase and related proteins
KEGG Orthology K01590; hdc, histidine decarboxylase
Gene Ontology GO:0016831; carboxy-lyase activity


Orthologs (automatic annotation)
TAIR AT1G43710 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os02g33710.1 : decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a031550 , Zm00025a020592
Brachypodium KQJ82583 , KQJ99801
Barley -
Wheat -
Populus PNT37469


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G155600 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
2 Sobic.009G218900 CPuORF26 - conserved peptide uORF-containing transcript, expressed K05929: E2.1.1.103, phosphoethanolamine N-methyltransferase
3 Sobic.001G415700 expressed protein -
4 Sobic.002G301200 OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed K16298: serine carboxypeptidase-like clade IV
5 Sobic.003G260900 methyltransferase, putative, expressed -
6 Sobic.001G178100 inositol-1-monophosphatase, putative, expressed K10047: inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase
7 Sobic.001G173500 - -
8 Sobic.002G321400 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
9 Sobic.009G127500 Alpha amylase, catalytic domain containing protein, expressed -
10 Sobic.008G021200 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
11 Sobic.003G327700 cysteine proteinase inhibitor (cystatin)(PubMedID : 8709954)@cysteine proteinase inhibitor precursor protein, putative, expressed -
12 Sobic.003G047900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@boron transporter protein, putative, expressed -
13 Sobic.001G469700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
14 Sobic.002G072300 5-nucleotidase surE, putative, expressed K03787: 5'-nucleotidase
15 Sobic.002G393700 expressed protein -
16 Sobic.001G518200 - K06928: nucleoside-triphosphatase
17 Sobic.001G222600 cyanate hydratase, putative, expressed K01725: cyanate lyase
18 Sobic.006G084400 OsAPx7 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
19 Sobic.001G032200 transporter, major facilitator superfamily domain containing protein, expressed -
20 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D


Gene co-expression network
sample Sobic004G170200 Sobic004G170200 Sobic009G155600 Sobic009G155600 Sobic004G170200--Sobic009G155600 Sobic009G218900 Sobic009G218900 Sobic004G170200--Sobic009G218900 Sobic001G415700 Sobic001G415700 Sobic004G170200--Sobic001G415700 Sobic002G301200 Sobic002G301200 Sobic004G170200--Sobic002G301200 Sobic003G260900 Sobic003G260900 Sobic004G170200--Sobic003G260900 Sobic001G178100 Sobic001G178100 Sobic004G170200--Sobic001G178100 Sobic001G173500 Sobic001G173500 Sobic004G170200--Sobic001G173500 Sobic002G321400 Sobic002G321400 Sobic004G170200--Sobic002G321400 Sobic009G127500 Sobic009G127500 Sobic004G170200--Sobic009G127500 Sobic009G155600--Sobic003G260900 Sobic006G067500 Sobic006G067500 Sobic009G155600--Sobic006G067500 Sobic008G095400 Sobic008G095400 Sobic009G155600--Sobic008G095400 Sobic001G513800 Sobic001G513800 Sobic009G155600--Sobic001G513800 Sobic001G025800 Sobic001G025800 Sobic009G155600--Sobic001G025800 Sobic007G208300 Sobic007G208300 Sobic009G155600--Sobic007G208300 Sobic004G064300 Sobic004G064300 Sobic009G155600--Sobic004G064300 Sobic001G033100 Sobic001G033100 Sobic009G155600--Sobic001G033100 Sobic008G050400 Sobic008G050400 Sobic009G155600--Sobic008G050400 Sobic008G030600 Sobic008G030600 Sobic009G218900--Sobic008G030600 Sobic009G070600 Sobic009G070600 Sobic009G218900--Sobic009G070600 Sobic009G070700 Sobic009G070700 Sobic009G218900--Sobic009G070700 Sobic001G192100 Sobic001G192100 Sobic009G218900--Sobic001G192100 Sobic009G218900--Sobic004G170200 Sobic003G173700 Sobic003G173700 Sobic009G218900--Sobic003G173700 Sobic001G068600 Sobic001G068600 Sobic009G218900--Sobic001G068600 Sobic001G363700 Sobic001G363700 Sobic009G218900--Sobic001G363700 Sobic004G335500 Sobic004G335500 Sobic009G218900--Sobic004G335500 Sobic001G032200 Sobic001G032200 Sobic001G415700--Sobic001G032200 Sobic001G116500 Sobic001G116500 Sobic001G415700--Sobic001G116500 Sobic004G162500 Sobic004G162500 Sobic001G415700--Sobic004G162500 Sobic001G415700--Sobic001G178100 Sobic002G072300 Sobic002G072300 Sobic001G415700--Sobic002G072300 Sobic001G537100 Sobic001G537100 Sobic001G415700--Sobic001G537100 Sobic002G291400 Sobic002G291400 Sobic001G415700--Sobic002G291400 Sobic001G292900 Sobic001G292900 Sobic001G415700--Sobic001G292900 Sobic001G415700--Sobic004G170200 Sobic005G004100 Sobic005G004100 Sobic002G301200--Sobic005G004100 Sobic001G486700 Sobic001G486700 Sobic002G301200--Sobic001G486700 Sobic003G420900 Sobic003G420900 Sobic002G301200--Sobic003G420900 Sobic002G301200--Sobic002G321400 Sobic004G275600 Sobic004G275600 Sobic002G301200--Sobic004G275600 Sobic009G256000 Sobic009G256000 Sobic002G301200--Sobic009G256000 Sobic007G130800 Sobic007G130800 Sobic002G301200--Sobic007G130800 Sobic004G314500 Sobic004G314500 Sobic002G301200--Sobic004G314500 Sobic010G059200 Sobic010G059200 Sobic002G301200--Sobic010G059200 Sobic003G260900--Sobic009G155600 Sobic003G260900--Sobic001G513800 Sobic002G121300 Sobic002G121300 Sobic003G260900--Sobic002G121300 Sobic008G021200 Sobic008G021200 Sobic003G260900--Sobic008G021200 Sobic003G260900--Sobic007G208300 Sobic003G260900--Sobic008G095400 Sobic003G260900--Sobic001G025800 Sobic005G117300 Sobic005G117300 Sobic003G260900--Sobic005G117300 Sobic008G090900 Sobic008G090900 Sobic003G260900--Sobic008G090900 Sobic002G407000 Sobic002G407000 Sobic001G178100--Sobic002G407000 Sobic001G178100--Sobic009G127500 Sobic001G067700 Sobic001G067700 Sobic001G178100--Sobic001G067700 Sobic003G010800 Sobic003G010800 Sobic001G178100--Sobic003G010800 Sobic001G201900 Sobic001G201900 Sobic001G178100--Sobic001G201900 Sobic003G291800 Sobic003G291800 Sobic001G178100--Sobic003G291800 Sobic001G178100--Sobic001G116500 Sobic010G134000 Sobic010G134000 Sobic001G178100--Sobic010G134000 Sobic007G069101 Sobic007G069101 Sobic001G178100--Sobic007G069101 Sobic003G327700 Sobic003G327700 Sobic001G173500--Sobic003G327700 Sobic003G244200 Sobic003G244200 Sobic001G173500--Sobic003G244200 Sobic003G125701 Sobic003G125701 Sobic001G173500--Sobic003G125701 Sobic001G222600 Sobic001G222600 Sobic001G173500--Sobic001G222600 Sobic007G069200 Sobic007G069200 Sobic001G173500--Sobic007G069200 Sobic001G147300 Sobic001G147300 Sobic001G173500--Sobic001G147300 Sobic006G084400 Sobic006G084400 Sobic001G173500--Sobic006G084400 Sobic001G012600 Sobic001G012600 Sobic001G173500--Sobic001G012600 Sobic001G012200 Sobic001G012200 Sobic001G173500--Sobic001G012200 Sobic004G060100 Sobic004G060100 Sobic002G321400--Sobic004G060100 Sobic002G321400--Sobic008G021200 Sobic002G321400--Sobic009G256000 Sobic005G018800 Sobic005G018800 Sobic002G321400--Sobic005G018800 Sobic001G435400 Sobic001G435400 Sobic002G321400--Sobic001G435400 Sobic007G161200 Sobic007G161200 Sobic002G321400--Sobic007G161200 Sobic002G321400--Sobic002G301200 Sobic004G283600 Sobic004G283600 Sobic002G321400--Sobic004G283600 Sobic004G094700 Sobic004G094700 Sobic002G321400--Sobic004G094700 Sobic009G127500--Sobic001G178100 Sobic009G127500--Sobic002G407000 Sobic010G047700 Sobic010G047700 Sobic009G127500--Sobic010G047700 Sobic009G127500--Sobic001G116500 Sobic009G127500--Sobic004G064300 Sobic009G127500--Sobic001G067700 Sobic001G282800 Sobic001G282800 Sobic009G127500--Sobic001G282800 Sobic009G127500--Sobic010G134000 Sobic003G375700 Sobic003G375700 Sobic009G127500--Sobic003G375700
Octagon: transcription factors


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