Gene annotation
Transcriptome id Sobic.009G127500.4,Sobic.009G127500.5,Sobic.009G127500.3,Sobic.009G127500.2
Synonym DBE1, ISA2, ATISA2, BE2, Sb09g019480
Functional annotation Alpha amylase, catalytic domain containing protein, expressed
UniProt C5YXK3
Pfam PF00128 PF02922
Panther DB PTHR10357 PTHR10357:SF115
NCBI CDD KOG0470; 1,4-alpha-glucan branching enzyme/starch branching enzyme II
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G03310 : debranching enzyme 1
RAP-DB (Rice) LOC_Os05g32710.1 : Alpha amylase, catalytic domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043606
Brachypodium KQK06394
Barley HORVU1Hr1G062690.6 , HORVU1Hr1G062690.4 , HORVU1Hr1G062690.5 , HORVU1Hr1G062690.2 , HORVU1Hr1G062690.3 , HORVU1Hr1G062690.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G127500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G178100 inositol-1-monophosphatase, putative, expressed K10047: inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase
2 Sobic.002G407000 4-alpha-glucanotransferase, putative, expressed K00705: 4-alpha-glucanotransferase
3 Sobic.010G047700 starch synthase, putative, expressed K00703: starch synthase
4 Sobic.001G116500 phosphoglucomutase, putative, expressed K01835: phosphoglucomutase
5 Sobic.004G064300 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
6 Sobic.001G067700 amine oxidase-related, putative, expressed -
7 Sobic.001G282800 AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
8 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
9 Sobic.003G375700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.009G155600 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
11 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
12 Sobic.001G201900 folylpolyglutamate synthetase, putative, expressed K01930: folylpolyglutamate synthase
13 Sobic.003G402000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.005G111700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.006G066800 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
16 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
17 Sobic.001G021000 nicotinate phosphoribosyltransferase family domain containing protein, expressed K00763: pncB, nicotinate phosphoribosyltransferase
18 Sobic.007G069101 - -
19 Sobic.001G033100 expressed protein -
20 Sobic.003G291800 hexokinase, putative, expressed K00844: hexokinase


Gene co-expression network
sample Sobic009G127500 Sobic009G127500 Sobic001G178100 Sobic001G178100 Sobic009G127500--Sobic001G178100 Sobic002G407000 Sobic002G407000 Sobic009G127500--Sobic002G407000 Sobic010G047700 Sobic010G047700 Sobic009G127500--Sobic010G047700 Sobic001G116500 Sobic001G116500 Sobic009G127500--Sobic001G116500 Sobic004G064300 Sobic004G064300 Sobic009G127500--Sobic004G064300 Sobic001G067700 Sobic001G067700 Sobic009G127500--Sobic001G067700 Sobic001G282800 Sobic001G282800 Sobic009G127500--Sobic001G282800 Sobic010G134000 Sobic010G134000 Sobic009G127500--Sobic010G134000 Sobic003G375700 Sobic003G375700 Sobic009G127500--Sobic003G375700 Sobic001G178100--Sobic002G407000 Sobic001G178100--Sobic009G127500 Sobic001G178100--Sobic001G067700 Sobic003G010800 Sobic003G010800 Sobic001G178100--Sobic003G010800 Sobic001G201900 Sobic001G201900 Sobic001G178100--Sobic001G201900 Sobic003G291800 Sobic003G291800 Sobic001G178100--Sobic003G291800 Sobic001G178100--Sobic001G116500 Sobic001G178100--Sobic010G134000 Sobic007G069101 Sobic007G069101 Sobic001G178100--Sobic007G069101 Sobic002G407000--Sobic001G201900 Sobic007G113600 Sobic007G113600 Sobic002G407000--Sobic007G113600 Sobic002G407000--Sobic001G178100 Sobic001G411200 Sobic001G411200 Sobic002G407000--Sobic001G411200 Sobic003G403300 Sobic003G403300 Sobic002G407000--Sobic003G403300 Sobic002G098900 Sobic002G098900 Sobic002G407000--Sobic002G098900 Sobic002G407000--Sobic010G134000 Sobic002G407000--Sobic001G067700 Sobic002G407000--Sobic003G010800 Sobic006G066800 Sobic006G066800 Sobic010G047700--Sobic006G066800 Sobic004G206100 Sobic004G206100 Sobic010G047700--Sobic004G206100 Sobic006G063900 Sobic006G063900 Sobic010G047700--Sobic006G063900 Sobic001G015200 Sobic001G015200 Sobic010G047700--Sobic001G015200 Sobic004G028300 Sobic004G028300 Sobic010G047700--Sobic004G028300 Sobic003G370000 Sobic003G370000 Sobic010G047700--Sobic003G370000 Sobic001G167900 Sobic001G167900 Sobic010G047700--Sobic001G167900 Sobic008G088821 Sobic008G088821 Sobic010G047700--Sobic008G088821 Sobic004G359600 Sobic004G359600 Sobic010G047700--Sobic004G359600 Sobic004G094700 Sobic004G094700 Sobic001G116500--Sobic004G094700 Sobic001G537100 Sobic001G537100 Sobic001G116500--Sobic001G537100 Sobic005G111700 Sobic005G111700 Sobic001G116500--Sobic005G111700 Sobic006G039400 Sobic006G039400 Sobic001G116500--Sobic006G039400 Sobic001G116500--Sobic001G178100 Sobic003G279200 Sobic003G279200 Sobic001G116500--Sobic003G279200 Sobic004G018000 Sobic004G018000 Sobic001G116500--Sobic004G018000 Sobic001G435400 Sobic001G435400 Sobic001G116500--Sobic001G435400 Sobic001G462200 Sobic001G462200 Sobic001G116500--Sobic001G462200 Sobic001G513800 Sobic001G513800 Sobic004G064300--Sobic001G513800 Sobic005G117300 Sobic005G117300 Sobic004G064300--Sobic005G117300 Sobic008G050400 Sobic008G050400 Sobic004G064300--Sobic008G050400 Sobic001G025800 Sobic001G025800 Sobic004G064300--Sobic001G025800 Sobic009G155600 Sobic009G155600 Sobic004G064300--Sobic009G155600 Sobic002G304100 Sobic002G304100 Sobic004G064300--Sobic002G304100 Sobic007G208300 Sobic007G208300 Sobic004G064300--Sobic007G208300 Sobic008G095400 Sobic008G095400 Sobic004G064300--Sobic008G095400 Sobic001G495200 Sobic001G495200 Sobic004G064300--Sobic001G495200 Sobic001G067700--Sobic003G403300 Sobic001G067700--Sobic002G407000 Sobic001G067700--Sobic002G098900 Sobic001G067700--Sobic001G178100 Sobic008G018700 Sobic008G018700 Sobic001G067700--Sobic008G018700 Sobic001G067700--Sobic003G010800 Sobic002G181600 Sobic002G181600 Sobic001G067700--Sobic002G181600 Sobic002G310900 Sobic002G310900 Sobic001G067700--Sobic002G310900 Sobic001G067700--Sobic005G111700 Sobic003G150500 Sobic003G150500 Sobic001G282800--Sobic003G150500 Sobic001G282800--Sobic001G411200 Sobic004G154700 Sobic004G154700 Sobic001G282800--Sobic004G154700 Sobic002G004600 Sobic002G004600 Sobic001G282800--Sobic002G004600 Sobic009G231800 Sobic009G231800 Sobic001G282800--Sobic009G231800 Sobic002G043800 Sobic002G043800 Sobic001G282800--Sobic002G043800 Sobic004G151800 Sobic004G151800 Sobic001G282800--Sobic004G151800 Sobic004G143300 Sobic004G143300 Sobic001G282800--Sobic004G143300 Sobic001G282800--Sobic002G407000 Sobic010G134000--Sobic003G010800 Sobic003G433400 Sobic003G433400 Sobic010G134000--Sobic003G433400 Sobic010G134000--Sobic003G403300 Sobic010G134000--Sobic002G310900 Sobic010G134000--Sobic002G407000 Sobic010G134000--Sobic001G411200 Sobic010G134000--Sobic003G291800 Sobic010G134000--Sobic001G178100 Sobic006G270000 Sobic006G270000 Sobic010G134000--Sobic006G270000 Sobic008G064500 Sobic008G064500 Sobic003G375700--Sobic008G064500 Sobic009G210200 Sobic009G210200 Sobic003G375700--Sobic009G210200 Sobic003G375700--Sobic003G370000 Sobic008G061401 Sobic008G061401 Sobic003G375700--Sobic008G061401 Sobic003G375700--Sobic004G028300 Sobic006G084400 Sobic006G084400 Sobic003G375700--Sobic006G084400 Sobic006G140500 Sobic006G140500 Sobic003G375700--Sobic006G140500 Sobic006G235350 Sobic006G235350 Sobic003G375700--Sobic006G235350 Sobic007G133900 Sobic007G133900 Sobic003G375700--Sobic007G133900
Octagon: transcription factors


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