Gene annotation
Transcriptome id Sobic.001G353400.1,Sobic.001G353400.2
Synonym Sb01g033820
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
WD-40 repeat family protein, putative, expressed
UniProt A0A1B6QMW8 , A0A1B6QMV0
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF453
NCBI CDD KOG0771; Prolactin regulatory element-binding protein/Protein transport protein SEC12p
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G78070 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g26870.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002696
Brachypodium KQK21471 , KQK21469 , KQK21470
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G353400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G086800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G163600 WD-40 repeat family protein, putative, expressed -
3 Sobic.006G052200 nodulin, putative, expressed -
4 Sobic.008G075400 - -
5 Sobic.009G197300 BURP domain containing protein, expressed -
6 Sobic.007G108400 expressed protein -
7 Sobic.003G397600 expressed protein -
8 Sobic.001G276100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
9 Sobic.003G437800 abscisic stress-ripening, putative, expressed -
10 Sobic.005G072200 lipase, putative, expressed -
11 Sobic.010G199900 extracellular ligand-gated ion channel, putative, expressed -
12 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
13 Sobic.004G280100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G421400 expressed protein -
15 Sobic.007G025900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
16 Sobic.005G016400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
17 Sobic.003G052300 Raffinose synthase family protein(PubMedID : 26465154)@uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
18 Sobic.004G324100 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
19 Sobic.005G186800 OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed K08249: hydroxymandelonitrile lyase
20 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G353400 Sobic001G353400 Sobic007G086800 Sobic007G086800 Sobic001G353400--Sobic007G086800 Sobic001G163600 Sobic001G163600 Sobic001G353400--Sobic001G163600 Sobic006G052200 Sobic006G052200 Sobic001G353400--Sobic006G052200 Sobic008G075400 Sobic008G075400 Sobic001G353400--Sobic008G075400 Sobic009G197300 Sobic009G197300 Sobic001G353400--Sobic009G197300 Sobic007G108400 Sobic007G108400 Sobic001G353400--Sobic007G108400 Sobic003G397600 Sobic003G397600 Sobic001G353400--Sobic003G397600 Sobic001G276100 Sobic001G276100 Sobic001G353400--Sobic001G276100 Sobic003G437800 Sobic003G437800 Sobic001G353400--Sobic003G437800 Sobic007G086800--Sobic001G353400 Sobic001G012100 Sobic001G012100 Sobic007G086800--Sobic001G012100 Sobic003G260900 Sobic003G260900 Sobic007G086800--Sobic003G260900 Sobic002G081900 Sobic002G081900 Sobic007G086800--Sobic002G081900 Sobic003G135800 Sobic003G135800 Sobic007G086800--Sobic003G135800 Sobic001G416300 Sobic001G416300 Sobic007G086800--Sobic001G416300 Sobic006G170200 Sobic006G170200 Sobic007G086800--Sobic006G170200 Sobic004G151600 Sobic004G151600 Sobic007G086800--Sobic004G151600 Sobic001G427700 Sobic001G427700 Sobic007G086800--Sobic001G427700 Sobic008G172800 Sobic008G172800 Sobic001G163600--Sobic008G172800 Sobic007G025900 Sobic007G025900 Sobic001G163600--Sobic007G025900 Sobic002G001900 Sobic002G001900 Sobic001G163600--Sobic002G001900 Sobic008G097300 Sobic008G097300 Sobic001G163600--Sobic008G097300 Sobic006G123500 Sobic006G123500 Sobic001G163600--Sobic006G123500 Sobic004G099700 Sobic004G099700 Sobic001G163600--Sobic004G099700 Sobic004G063200 Sobic004G063200 Sobic001G163600--Sobic004G063200 Sobic006G002900 Sobic006G002900 Sobic001G163600--Sobic006G002900 Sobic001G404500 Sobic001G404500 Sobic001G163600--Sobic001G404500 Sobic005G072200 Sobic005G072200 Sobic006G052200--Sobic005G072200 Sobic001G161300 Sobic001G161300 Sobic006G052200--Sobic001G161300 Sobic003G402200 Sobic003G402200 Sobic006G052200--Sobic003G402200 Sobic006G052200--Sobic001G276100 Sobic008G111300 Sobic008G111300 Sobic006G052200--Sobic008G111300 Sobic001G320700 Sobic001G320700 Sobic006G052200--Sobic001G320700 Sobic002G142066 Sobic002G142066 Sobic006G052200--Sobic002G142066 Sobic002G193400 Sobic002G193400 Sobic006G052200--Sobic002G193400 Sobic006G052200--Sobic001G404500 Sobic005G218500 Sobic005G218500 Sobic008G075400--Sobic005G218500 Sobic004G220600 Sobic004G220600 Sobic008G075400--Sobic004G220600 Sobic002G216500 Sobic002G216500 Sobic008G075400--Sobic002G216500 Sobic002G160600 Sobic002G160600 Sobic008G075400--Sobic002G160600 Sobic003G376200 Sobic003G376200 Sobic008G075400--Sobic003G376200 Sobic003G378301 Sobic003G378301 Sobic008G075400--Sobic003G378301 Sobic008G075400--Sobic001G320700 Sobic003G248901 Sobic003G248901 Sobic008G075400--Sobic003G248901 Sobic004G140000 Sobic004G140000 Sobic008G075400--Sobic004G140000 Sobic006G007600 Sobic006G007600 Sobic009G197300--Sobic006G007600 Sobic001G201800 Sobic001G201800 Sobic009G197300--Sobic001G201800 Sobic009G075100 Sobic009G075100 Sobic009G197300--Sobic009G075100 Sobic009G000900 Sobic009G000900 Sobic009G197300--Sobic009G000900 Sobic004G007500 Sobic004G007500 Sobic009G197300--Sobic004G007500 Sobic004G078600 Sobic004G078600 Sobic009G197300--Sobic004G078600 Sobic009G070800 Sobic009G070800 Sobic009G197300--Sobic009G070800 Sobic009G115400 Sobic009G115400 Sobic009G197300--Sobic009G115400 Sobic002G108400 Sobic002G108400 Sobic009G197300--Sobic002G108400 Sobic007G079400 Sobic007G079400 Sobic007G108400--Sobic007G079400 Sobic009G190600 Sobic009G190600 Sobic007G108400--Sobic009G190600 Sobic003G105900 Sobic003G105900 Sobic007G108400--Sobic003G105900 Sobic004G238200 Sobic004G238200 Sobic007G108400--Sobic004G238200 Sobic001G057700 Sobic001G057700 Sobic007G108400--Sobic001G057700 Sobic001G292000 Sobic001G292000 Sobic007G108400--Sobic001G292000 Sobic003G264800 Sobic003G264800 Sobic007G108400--Sobic003G264800 Sobic010G259100 Sobic010G259100 Sobic007G108400--Sobic010G259100 Sobic002G072400 Sobic002G072400 Sobic007G108400--Sobic002G072400 Sobic002G136100 Sobic002G136100 Sobic003G397600--Sobic002G136100 Sobic003G328100 Sobic003G328100 Sobic003G397600--Sobic003G328100 Sobic001G314400 Sobic001G314400 Sobic003G397600--Sobic001G314400 Sobic008G046400 Sobic008G046400 Sobic003G397600--Sobic008G046400 Sobic006G145700 Sobic006G145700 Sobic003G397600--Sobic006G145700 Sobic006G140700 Sobic006G140700 Sobic003G397600--Sobic006G140700 Sobic003G397600--Sobic003G437800 Sobic010G177800 Sobic010G177800 Sobic003G397600--Sobic010G177800 Sobic003G329700 Sobic003G329700 Sobic003G397600--Sobic003G329700 Sobic001G276100--Sobic001G161300 Sobic001G276100--Sobic009G000900 Sobic001G276100--Sobic004G007500 Sobic002G226100 Sobic002G226100 Sobic001G276100--Sobic002G226100 Sobic001G276100--Sobic009G197300 Sobic003G355800 Sobic003G355800 Sobic001G276100--Sobic003G355800 Sobic003G214000 Sobic003G214000 Sobic001G276100--Sobic003G214000 Sobic001G276100--Sobic006G052200 Sobic002G384400 Sobic002G384400 Sobic001G276100--Sobic002G384400 Sobic003G437800--Sobic003G397600 Sobic002G001000 Sobic002G001000 Sobic003G437800--Sobic002G001000 Sobic003G437800--Sobic001G292000 Sobic003G437800--Sobic006G145700 Sobic002G072100 Sobic002G072100 Sobic003G437800--Sobic002G072100 Sobic003G437800--Sobic002G072400 Sobic003G437800--Sobic010G177800 Sobic009G187400 Sobic009G187400 Sobic003G437800--Sobic009G187400 Sobic004G207400 Sobic004G207400 Sobic003G437800--Sobic004G207400
Octagon: transcription factors


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